Hi,
Try:
fslmaths <T2img> -mas <PDmask> T2img_bet
This should do the job.
wolf
Julian Henty wrote:
> Hi,
>
> I’ve been using FSL for a just a few months, and I’d like to use a binary mask
> to perform a brain extraction on an image. The mask was created during a
> BET2 on a PD image and, since BET doesn’t work well on our T2 images, I
> want to perform this instead using the mask.
>
> I have tried using 'slicesmask', but after over an hour it hadn't finished so I
> gave up with it.
>
> Any ideas how to do this?
>
> Thanks,
>
> Julian
>
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