|
|
|
I'm trying to run fnirt, but am running into this error message
Error occured during estimation at subsampling level > 1
Exception thrown with message: St9bad_alloc
SSD = 44.2142 Disp reg = 11.2824
I've attached my config file. I'm basically just subbing out the MNI
template for a T2 image from the same subject.
the command i used was this:
fnirt --config=T2.cnf --in=nodif.cardRPI.regToT2.nii
--refout=T2.cardRPI.unb --iout=nodif.NLregToT2 --logout=fnirt.log1 -vvv >
fnirtoutput.vvv.txt
The logfile only seems to give me the options i used.
I didn't get this error when i tried registering to the MNI template.
Suggestions?
New Lambda: 300
New FWHM (mm) for --ref: 8
New FWHM (mm) for --in: 8
New Matrix Size: 68 67 35
New Voxel Size: 3.5 3.5 3.5
SSD = 24171.8 Disp reg = 0 Int reg = 0.105521 Total Cost = 24171.9
SSD = 480.351 Disp reg = 0.155444 Int reg = 4.3749 Total Cost = 484.881
SSD = 37.893 Disp reg = 0.669694 Int reg = 2.33074 Total Cost = 40.8934
SSD = 18.0131 Disp reg = 2.66283 Int reg = 5.66279 Total Cost = 26.3387
SSD = 121.279 Disp reg = 34.4063 Int reg = 11.0043 Total Cost = 166.69
SSD = 26.515 Disp reg = 6.97896 Int reg = 10.5476 Total Cost = 44.0416
SSD = 16.3647 Disp reg = 3.97093 Int reg = 9.0251 Total Cost = 29.3608
SSD = 17.1126 Disp reg = 3.50435 Int reg = 5.5188 Total Cost = 26.1358
SSD = 14.5735 Disp reg = 2.99463 Int reg = 14.0808 Total Cost = 31.6489
SSD = 15.2912 Disp reg = 2.90428 Int reg = 9.9057 Total Cost = 28.1012
SSD = 16.0364 Disp reg = 3.07997 Int reg = 1.41619 Total Cost = 20.5326
Jacobian range is 0.49422 -- 1.12209
***Going to next resolution level***
New FWHM (mm) for --ref: 6
New FWHM (mm) for --in: 6
Setting subsampling
Setting reg mode
Setting lambda
New Lambda: 150
SSD = 32.8318 Disp reg = 3.15285 Int reg = 1.41619 Total Cost = 37.4009
SSD = 25.3971 Disp reg = 3.45906 Int reg = 1.3655 Total Cost = 30.2217
SSD = 21.991 Disp reg = 4.27894 Int reg = 2.0708 Total Cost = 28.3407
SSD = 28.0696 Disp reg = 6.61323 Int reg = 3.74016 Total Cost = 38.423
SSD = 20.9244 Disp reg = 4.63193 Int reg = 3.77263 Total Cost = 29.3289
SSD = 21.5613 Disp reg = 4.506 Int reg = 2.97918 Total Cost = 29.0465
SSD = 21.7882 Disp reg = 4.27455 Int reg = 0.893274 Total Cost = 26.9561
SSD = 21.4509 Disp reg = 4.31914 Int reg = 1.04901 Total Cost = 26.8191
SSD = 20.7009 Disp reg = 4.38167 Int reg = 1.34207 Total Cost = 26.4246
Jacobian range is 0.262878 -- 1.23402
***Going to next resolution level***
New FWHM (mm) for --ref: 5
New FWHM (mm) for --in: 5
Setting subsampling
New Matrix Size: 134 133 68
New Voxel Size: 1.75 1.75 1.75
Setting reg mode
Setting lambda
New Lambda: 100
SSD = 30.8958 Disp reg = 7.44462 Int reg = 1.34078 Total Cost = 39.6812
SSD = 21.1596 Disp reg = 5.57172 Int reg = 2.27162 Total Cost = 29.0029
SSD = 18.3929 Disp reg = 7.31606 Int reg = 4.88778 Total Cost = 30.5968
SSD = 19.7277 Disp reg = 5.88048 Int reg = 3.91276 Total Cost = 29.521
SSD = 20.6824 Disp reg = 3.60658 Int reg = 0.870043 Total Cost = 25.1591
SSD = 19.2836 Disp reg = 3.86947 Int reg = 1.18371 Total Cost = 24.3368
SSD = 17.6192 Disp reg = 4.41026 Int reg = 1.94773 Total Cost = 23.9772
SSD = 26.8789 Disp reg = 8.23877 Int reg = 4.43044 Total Cost = 39.5481
SSD = 16.7395 Disp reg = 5.02409 Int reg = 4.5874 Total Cost = 26.351
SSD = 17.1208 Disp reg = 4.78045 Int reg = 3.71509 Total Cost = 25.6164
SSD = 17.4033 Disp reg = 4.09099 Int reg = 0.857569 Total Cost = 22.3519
Jacobian range is 0.147958 -- 1.41919
***Going to next resolution level***
New FWHM (mm) for --ref: 4
New FWHM (mm) for --in: 4.5
Setting subsampling
Setting reg mode
Setting lambda
New Lambda: 50
SSD = 24.9407 Disp reg = 2.9314 Int reg = 0.857569 Total Cost = 28.7297
SSD = 21.7649 Disp reg = 3.30905 Int reg = 1.06435 Total Cost = 26.1383
SSD = 20.1945 Disp reg = 3.64313 Int reg = 1.99035 Total Cost = 25.828
SSD = 19.3289 Disp reg = 4.46977 Int reg = 4.34752 Total Cost = 28.1462
SSD = 19.5242 Disp reg = 4.38422 Int reg = 4.28513 Total Cost = 28.1935
SSD = 19.892 Disp reg = 4.19724 Int reg = 3.48094 Total Cost = 27.5702
SSD = 20.0824 Disp reg = 3.53906 Int reg = 0.846269 Total Cost = 24.4677
SSD = 19.8316 Disp reg = 3.69022 Int reg = 1.11693 Total Cost = 24.6387
SSD = 20.0081 Disp reg = 3.52624 Int reg = 0.686896 Total Cost = 24.2212
SSD = 19.8246 Disp reg = 3.6097 Int reg = 0.717841 Total Cost = 24.1522
Jacobian range is 0.0480362 -- 1.43924
***Going to next resolution level***
New FWHM (mm) for --ref: 2
New FWHM (mm) for --in: 3
Setting subsampling
New Matrix Size: 267 264 135
New Voxel Size: 0.875 0.875 0.875
Setting reg mode
Setting lambda
New Lambda: 40
SSD = 80.1871 Disp reg = 16.8047 Int reg = 0.716033 Total Cost = 97.7078
SSD = 44.2142 Disp reg = 11.2824
|
|
|
|
|
|
|
