Hi Russell,
I'm afraid the best option is to go for the newest version of FSL-VBM since it uses an in-house non-linear registration and a more refined template generation... The good news is that fnirt is running quite quickly compare to IRTK.
Cheers,
Gwenaelle
--- En date de : Sam 13.9.08, Russell Chu <[log in to unmask]> a écrit :
> De: Russell Chu <[log in to unmask]>
> Objet: [FSL] FSLVBM template_4D_GM image is not created
> À: [log in to unmask]
> Date: Samedi 13 Septembre 2008, 3h29
> Hi FSL,
>
> I've been trying to get the fslvbm_2_template step to
> work, but it does not
> create a template_4D_GM file even though it doesn't run
> into any errors. My
> template_list file is in the vbm directory (parent of FAi)
> and contains the
> original names of the original files without the _FAi
> suffix. I am working
> with .hdr/.img files and made sure that the template_list
> was consistent
> with the file extensions. I saw in another post that the
> IRTK might have
> been a problem. I am running FSL 4.0 on windows using
> VMWare's virtual
> machine. I am currently downloading version 4.1 to try to
> fix this problem,
> but does anyone have any suggestions that could save me the
> time of redoing
> my entire analysis? If not, do you know how I can check to
> see whether IRTK
> was installed properly on my system?
>
> Thanks,
> Russell
>
> [fsl@localhost t1s]$ fslvbm_2_template -n
> CON_A004_FAi
> CON_A013_FAi
> CON_A021_FAi
> CON_A135_FAi
> CON_A143_FAi
> CON_A150_FAi
> CON_A173_FAi
> CON_A195_FAi
> CON_A229_FAi
> CON_A286_FAi
> CON_A376_FAi
> CON_A429_FAi
> CON_A502_FAi
> CON_A511_FAi
> CON_A535_FAi
> CON_A586_FAi
> CON_A598_FAi
> CON_A608_FAi
> CON_A651_FAi
> CON_A654_FAi
> CON_A655_FAi
> CON_A697_FAi
> CON_A749_FAi
> CON_A792_FAi
> CON_A808_FAi
> CON_A816_FAi
> CON_A850_FAi
> CON_A852_FAi
> CON_A862_FAi
> CON_A878_FAi
> CON_A879_FAi
> CON_A887_FAi
> CON_A913_FAi
> CON_A934_FAi
> CON_A972_FAi
> CON_A976_FAi
> CON_A987_FAi
> CON_D021_FAi
> CON_D078_FAi
> CON_D107_FAi
> CON_D114_FAi
> CON_D272_FAi
> CON_D323_FAi
> CON_D347_FAi
> CON_D386_FAi
> CON_D476_FAi
> CON_D581_FAi
> CON_D789_FAi
> LTAA_A007_FAi
> LTAA_A052_FAi
> LTAA_A059_FAi
> LTAA_A112_FAi
> LTAA_A136_FAi
> LTAA_A149_FAi
> LTAA_A157_FAi
> LTAA_A160_FAi
> LTAA_A163_FAi
> LTAA_A166_FAi
> LTAA_A201_FAi
> LTAA_A209_FAi
> LTAA_A247_FAi
> LTAA_A253_FAi
> LTAA_A269_FAi
> LTAA_A304_FAi
> LTAA_A307_FAi
> LTAA_A314_FAi
> LTAA_A336_FAi
> LTAA_A356_FAi
> LTAA_A363_FAi
> LTAA_A374_FAi
> LTAA_A403_FAi
> LTAA_A432_FAi
> LTAA_A434_FAi
> LTAA_A456_FAi
> LTAA_A457_FAi
> LTAA_A458_FAi
> LTAA_A467_FAi
> LTAA_A478_FAi
> LTAA_A508_FAi
> LTAA_A523_FAi
> LTAA_A548_FAi
> LTAA_A605_FAi
> LTAA_A614_FAi
> LTAA_A619_FAi
> LTAA_A632_FAi
> LTAA_A633_FAi
> LTAA_A637_FAi
> LTAA_A641_FAi
> LTAA_A650_FAi
> LTAA_A660_FAi
> LTAA_A666_FAi
> LTAA_A703_FAi
> LTAA_A718_FAi
> LTAA_A727_FAi
> LTAA_A760_FAi
> LTAA_A774_FAi
> LTAA_A823_FAi
> LTAA_A841_FAi
> LTAA_A914_FAi
> LTAA_A945_FAi
> Running segmentation: ID=19838
> Running registration: ID=4247
> Creating template: ID=29162
> Study-specific template will be created, when complete,
> check
> FAi/template_4D_GM as a movie loop in fslview
>
> [fsl@localhost t1s]$ ls
> design.con design.fsf design.mat FAi
> Subject.xls
> design_cov.png design.fts design.png origdata
> template_list
> design_cov.ppm design.grp design.ppm stats
> [fsl@localhost t1s]$
|