Hi
I'm trying to export a peak lists from analysis. Files have been generated
analysis 1.1.15 on a Centos Linux box. This is a fresh install of analysis
as the PC is new. However i get the following error message (listed below).
I have a custom amino acid in the file (which is the reason for the XPLOR
chemAtomSysName warnings). I have had no other error messages and normal
analysis functions seem to be fine/
I have recompiled analysis just in case.
Can anyone suggest an explanation and a possible fix for this problem.
Thanks.
Eliza
#########################################
# FormatConverter: executing writePeaks #
#########################################
Exception exceptions.RuntimeError: 'main thread is not in main loop' in
<bound method StringVar.__del__ of <Tkinter.StringVar instance at
0x14c55170>> ignored
Exception exceptions.RuntimeError: 'main thread is not in main loop' in
<bound method IntVar.__del__ of <Tkinter.IntVar instance at 0x1b00c128>> ignored
Exception exceptions.RuntimeError: 'main thread is not in main loop' in
<bound method StringVar.__del__ of <Tkinter.StringVar instance at
0x1b00d680>> ignored
Exception exceptions.RuntimeError: 'main thread is not in main loop' in
<bound method StringVar.__del__ of <Tkinter.StringVar instance at
0x14c2b200>> ignored
Exception exceptions.RuntimeError: 'main thread is not in main loop' in
<bound method StringVar.__del__ of <Tkinter.StringVar instance at
0x14c2fb00>> ignored
Exception exceptions.RuntimeError: 'main thread is not in main loop' in
<bound method StringVar.__del__ of <Tkinter.StringVar instance at
0x1b00b050>> ignored
Warning: no XPLOR chemAtomSysName available for 'A.8.CG*', trying IUPAC.
Warning: no XPLOR chemAtomSysName available for 'A.11.CD*', trying IUPAC.
Warning: no XPLOR chemAtomSysName available for 'A.15.CG*', trying IUPAC.
Warning: no XPLOR chemAtomSysName available for 'A.26.CG*', trying IUPAC.
Warning: no XPLOR chemAtomSysName available for 'A.32.CE*', trying IUPAC.
Warning: no XPLOR chemAtomSysName available for 'A.40.H', trying IUPAC.
Warning: no XPLOR sysName for A.40.H... using CCPN name.
Warning: no XPLOR chemAtomSysName available for 'A.56.CG*', trying IUPAC.
Warning: no XPLOR chemAtomSysName available for 'A.63.CG*', trying IUPAC.
Warning: no XPLOR chemAtomSysName available for 'A.40.H43A', trying IUPAC.
Warning: no XPLOR sysName for A.40.H43A... using CCPN name.
Warning: no XPLOR chemAtomSysName available for 'A.40.H43B', trying IUPAC.
Warning: no XPLOR sysName for A.40.H43B... using CCPN name.
Warning: no XPLOR chemAtomSysName available for 'A.66.CD*', trying IUPAC.
Warning: no XPLOR chemAtomSysName available for 'A.40.H4A', trying IUPAC.
Warning: no XPLOR sysName for A.40.H4A... using CCPN name.
Warning: no XPLOR chemAtomSysName available for 'A.40.H4B', trying IUPAC.
Warning: no XPLOR sysName for A.40.H4B... using CCPN name.
Warning: no XPLOR chemAtomSysName available for 'A.40.H5A', trying IUPAC.
Warning: no XPLOR sysName for A.40.H5A... using CCPN name.
Warning: no XPLOR chemAtomSysName available for 'A.40.H5B', trying IUPAC.
Warning: no XPLOR sysName for A.40.H5B... using CCPN name.
Warning: no XPLOR chemAtomSysName available for 'A.54.CD*', trying IUPAC.
Warning: no XPLOR chemAtomSysName available for 'A.54.CE*', trying IUPAC.
Warning: no XPLOR chemAtomSysName available for 'A.75.CD*', trying IUPAC.
Warning: no XPLOR chemAtomSysName available for 'A.75.CE*', trying IUPAC.
Exception in thread Thread-1:
Traceback (most recent call last):
File "/usr/lib64/python2.4/threading.py", line 442, in __bootstrap
self.run()
File
"/home/chzeap/programs/ccpnmr/ccpnmr1.0/python/ccpnmr/format/gui/ImportExportFormatPopup.py",
line 91, in run
self.returnValue = self.__target(*self.__args, **self.__kwargs)
File
"/home/chzeap/programs/ccpnmr/ccpnmr1.0/python/ccpnmr/format/converters/DataFormat.py",
line 2276, in writePeaks
self.peakDimSelect()
File
"/home/chzeap/programs/ccpnmr/ccpnmr1.0/python/ccpnmr/format/converters/DataFormat.py",
line 7626, in peakDimSelect
popup = self.multiDialog.PeakDimSelect(self.guiParent, self.peakList,
self.format, dataDimRefs = self.dataDimRefs, order = self.peakDimOrder)
File
"/home/chzeap/programs/ccpnmr/ccpnmr1.0/python/ccpnmr/format/general/MultiDialog.py",
line 502, in PeakDimSelect
return self.PeakDimSelectFunction(guiParent,*args,**kw)
File
"/home/chzeap/programs/ccpnmr/ccpnmr1.0/python/ccpnmr/format/gui/MultiDialog.py",
line 234, in PeakDimSelectFunction
popup = PeakDimSelectPopup(guiParent,*args,**kw)
File
"/home/chzeap/programs/ccpnmr/ccpnmr1.0/python/ccpnmr/format/gui/PeakDimSelectPopup.py",
line 89, in __init__
TemporaryBasePopup.__init__(self,parent = parent, title = "Project '%s':
" % self.peakList.root.name + "DataDimRef selection for PeakDims", modal =
False, transient=True)
File
"/home/chzeap/programs/ccpnmr/ccpnmr1.0/python/memops/gui/BasePopup.py",
line 84, in __init__
Tkinter.Toplevel.__init__(self, parent, *args, **kw)
File "/usr/lib64/python2.4/lib-tk/Tkinter.py", line 1906, in __init__
BaseWidget.__init__(self, master, 'toplevel', cnf, {}, extra)
File "/usr/lib64/python2.4/lib-tk/Tkinter.py", line 1862, in __init__
self.tk.call(
RuntimeError: main thread is not in main loop
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