Hi Kerstin & Matt,
Thanks for the help. I will have a check and process another sample.
Jian
----------------------------------------
> Date: Mon, 25 Aug 2008 20:50:25 -0500
> From: [log in to unmask]
> Subject: Re: [FSL] Problem with bedpostx-follow up
> To: [log in to unmask]
>
> Those screenshots are a little small, but the results look reasonable. I
> think that error message was fixed in the latest (4.1), but I could be
> wrong.
>
> Peace,
>
> Matt.
>
> -----Original Message-----
> From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf
> Of jian chen
> Sent: Monday, August 25, 2008 8:42 PM
> To: [log in to unmask]
> Subject: [FSL] Problem with bedpostx-follow up
>
>
> Dear FSLer,
>
> I also found the output images of bedpostx for my own data were strange (see
> the attachments). I wonder if there is something to do with my data.
>
> my bedpostx_datacheck is as following:
>
> bedpostx_datacheck dti
> dti/data
> data_type INT16
> dim1 128
> dim2 128
> dim3 64
> dim4 70
> datatype 4
> pixdim1 2.0000000000
> pixdim2 2.0000000000
> pixdim3 2.0000000000
> pixdim4 1.0000000000
> cal_max 0.0000
> cal_min 0.0000
> file_type NIFTI-1+
>
> dti/nodif_brain_mask
> data_type INT16
> dim1 128
> dim2 128
> dim3 64
> dim4 1
> datatype 4
> pixdim1 2.0000000000
> pixdim2 2.0000000000
> pixdim3 2.0000000000
> pixdim4 1.0000000000
> cal_max 0.0000
> cal_min 0.0000
> file_type NIFTI-1+
>
> num lines in dti/bvals
> 1
> num words in dti/bvals
> 70
> num lines in dti/bvecs
> 3
> num words in dti/bvecs
> 210
>
> Appreciate for any response.
>
> Jian
> ----------------------------------------
>> Date: Tue, 26 Aug 2008 01:12:05 +0000
>> From: [log in to unmask]
>> Subject: [FSL] Problem with bedpostx
>> To: [log in to unmask]
>>
>> Dear FSLer,
>>
>> I am new to FDT and am using FSL 4.1. I have a problem of running
> bedpostx. It ran fine on sample data but when I ran it on my only data met
> problem. I ran 4 times on the same data and 3 times I end of
>>
>> No merged_* or mean_* file created, only data_slices_001-*** in
>> *.bedpostx/diff_slices
>>
>> In the last run I finally got the mean* images, but also got following
> message
>> .
>> .
>> .
>> 58 slices processed
>> 59 slices processed
>> 62 slices processed
>> Queuing post processing stage
>> /scratch/Build/fsl/bin/bedpostx: line 209: 5360 Terminated
> ${subjdir}.bedpostX/monitor
>>
>> My image has is 128*128*64 and has 60 directions.
>>
>> Can some one give me advice?
>>
>> Jian
>> _________________________________________________________________
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>
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