Those screenshots are a little small, but the results look reasonable. I
think that error message was fixed in the latest (4.1), but I could be
wrong.
Peace,
Matt.
-----Original Message-----
From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf
Of jian chen
Sent: Monday, August 25, 2008 8:42 PM
To: [log in to unmask]
Subject: [FSL] Problem with bedpostx-follow up
Dear FSLer,
I also found the output images of bedpostx for my own data were strange (see
the attachments). I wonder if there is something to do with my data.
my bedpostx_datacheck is as following:
bedpostx_datacheck dti
dti/data
data_type INT16
dim1 128
dim2 128
dim3 64
dim4 70
datatype 4
pixdim1 2.0000000000
pixdim2 2.0000000000
pixdim3 2.0000000000
pixdim4 1.0000000000
cal_max 0.0000
cal_min 0.0000
file_type NIFTI-1+
dti/nodif_brain_mask
data_type INT16
dim1 128
dim2 128
dim3 64
dim4 1
datatype 4
pixdim1 2.0000000000
pixdim2 2.0000000000
pixdim3 2.0000000000
pixdim4 1.0000000000
cal_max 0.0000
cal_min 0.0000
file_type NIFTI-1+
num lines in dti/bvals
1
num words in dti/bvals
70
num lines in dti/bvecs
3
num words in dti/bvecs
210
Appreciate for any response.
Jian
----------------------------------------
> Date: Tue, 26 Aug 2008 01:12:05 +0000
> From: [log in to unmask]
> Subject: [FSL] Problem with bedpostx
> To: [log in to unmask]
>
> Dear FSLer,
>
> I am new to FDT and am using FSL 4.1. I have a problem of running
bedpostx. It ran fine on sample data but when I ran it on my only data met
problem. I ran 4 times on the same data and 3 times I end of
>
> No merged_* or mean_* file created, only data_slices_001-*** in
> *.bedpostx/diff_slices
>
> In the last run I finally got the mean* images, but also got following
message
> .
> .
> .
> 58 slices processed
> 59 slices processed
> 62 slices processed
> Queuing post processing stage
> /scratch/Build/fsl/bin/bedpostx: line 209: 5360 Terminated
${subjdir}.bedpostX/monitor
>
> My image has is 128*128*64 and has 60 directions.
>
> Can some one give me advice?
>
> Jian
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