The PISA tool at the EBI can calculate surface area contact, interacting
residues and salt bridges/hydrogen bonds between proteins and lots of
other things. And it's easy to use.
http://www.ebi.ac.uk/msd-srv/prot_int/pistart.html
Alan
Skrzypczak-Jankun, Ewa wrote:
> What is the best and user-friendly program to calculate a surface of the
> interface between two proteins? Or two domains?
>
>
>
> Is there any common criteria how to define boundary for that interface
> (other than van der Waals distance)?
>
>
>
> Thanks in advance for good tips - Ewa
>
>
>
> ********************************************************
>
> Dr Ewa Skrzypczak-Jankun Associate
> Professor
>
> University of Toledo Office:
> Dowling Hall r.2257
>
> Health Science Campus Phone:
> 419-383-5414
>
> Urology Department Mail Stop #1091 Fax: 419-383-3785
>
> 3000 Arlington Ave. e-mail:
> [log in to unmask] <mailto:[log in to unmask]>
>
> Toledo OH 43614-2598 web:
> http://golemxiv.dh.meduohio.edu/~ewa
>
> ********************************************************
>
>
>
--
Alan Cheung
Gene Center
Ludwig-Maximilians-University
Feodor-Lynen-Str. 25
81377 Munich
Germany
Phone: +49-89-2180-76845
Fax: +49-89-2180-76999
E-mail: [log in to unmask]
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