Hi,
Amit asked me about this and we noticed that the script returns to a
command prompt without creating the files and assumed that meant the
script completed. Is that correct, or does itcontinue to run in the
background? If so, will the process continue even after the terminal
window is closed, or does the window need to remain open?
Thanks,
Michael
On Jul 9, 2008, at 10:07 AM, Gwenaëlle DOUAUD
<[log in to unmask]> wrote:
> Hi Amit,
>
> first you only need to run fslvbm_2_template -a, which is the option
> recommended for this version of FSL-VBM (the option recommended in
> the future version of FSL-VBM using FNIRT will be -n).
> Then, you need to wait until you get the results and it can take a
> while, that's why you might still have no outcome. You should be
> able to see the various commands involved in the script running on
> your computer. If nothing has been created tomorrow, then let us
> know...
>
> Cheers,
> Gwenaelle
>
>
>
> --- En date de : Mer 9.7.08, Amit Raheja <[log in to unmask]> a
> écrit :
>
>> De: Amit Raheja <[log in to unmask]>
>> Objet: [FSL] Vbm
>> À: [log in to unmask]
>> Date: Mercredi 9 Juillet 2008, 15h43
>> I am having trouble with the fslvbm_2_template command. The
>> command seems
>> to run ok, but I do not get the 4D template output file.
>> Any ideas? Thank you.
>>
>> Here is the what is shown on my terminal.
>>
>>> bash-3.2$ fsl
>>> bash-3.2$ fslvbm_2_template -a
>>> CON10_FAi
>>> CON1_FAi
>>> CON2_FAi
>>> CON3_FAi
>>> CON4_FAi
>>> CON5_FAi
>>> CON6_FAi
>>> CON7_FAi
>>> CON8_FAi
>>> CON9_FAi
>>> TBI11_FAi
>>> TBI12_FAi
>>> TBI13_FAi
>>> TBI14_FAi
>>> TBI15_FAi
>>> TBI16_FAi
>>> TBI17_FAi
>>> TBI18_FAi
>>> TBI19_FAi
>>> TBI20_FAi
>>> TBI21_FAi
>>> TBI22_FAi
>>> TBI23_FAi
>>> TBI24_FAi
>>> TBI25_FAi
>>> TBI26_FAi
>>> TBI27_FAi
>>> Running segmentation: ID=91407
>>> Running registration: ID=92361
>>> Creating template: ID=95178
>>> Study-specific template will be created, when
>> complete, check
>>> FAi/template_4D_GM
>>> as a movie loop in fslview
>>> bash-3.2$ fslvbm_2_template -n
>>> CON10_FAi
>>> CON1_FAi
>>> CON2_FAi
>>> CON3_FAi
>>> CON4_FAi
>>> CON5_FAi
>>> CON6_FAi
>>> CON7_FAi
>>> CON8_FAi
>>> CON9_FAi
>>> TBI11_FAi
>>> TBI12_FAi
>>> TBI13_FAi
>>> TBI14_FAi
>>> TBI15_FAi
>>> TBI16_FAi
>>> TBI17_FAi
>>> TBI18_FAi
>>> TBI19_FAi
>>> TBI20_FAi
>>> TBI21_FAi
>>> TBI22_FAi
>>> TBI23_FAi
>>> TBI24_FAi
>>> TBI25_FAi
>>> TBI26_FAi
>>> TBI27_FAi
>>> Running segmentation: ID=96391
>>> Running registration: ID=97345
>>> Creating template: ID=8691
>>> Study-specific template will be created, when
>> complete, check
>>> FAi/template_4D_GM
>>> as a movie loop in fslview
>>> bash-3.2$
>
>
>
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