Hi
The easiest thing to do is to run mccutup on the ica directory. In
FEAT, you'd then run with 'Stats/poststats only' and add 6 more EVs in
the design GUI, choose the 'custom 1 column' EV type for each one of
them and specify the 3 rotation and 3 translation time courses.
hth
Christian
On 28 Jul 2008, at 22:28, Heather L. Urry wrote:
> Hello all:
>
> We're using MELODIC to denoise at the single subject level prior to
> running FEAT. As such, we did the Pre-Stats steps (motion
> correction, high pass filtering, etc.) as part of MELODIC (i.e., not
> in FEAT), identified the components to remove, and then used the
> fsl_regfilt command to remove them from filtered_func_data.nii.gz,
> saving denoised_data.nii.gz. I was next going to feed this
> denoised_data file into FEAT for the Stats and Post-Stats steps (Pre-
> Stats turned off), and I'd like to include motion parameters in the
> GLM. However, with Pre-Stats turned off, the "add motion parameters
> to model" option in the Stats tab is unavailable. I presume this is
> because Feat will assume that there are no motion parameters to
> model, but of course there are-- they're in the MELODIC directory. I
> was thinking I could tell FEAT to run a Full Analysis, but deselect
> all Pre-Stats options since this seems to make available the "add
> motion parameters" in the Stats tab, but how can I tell it where to
> find the motion parameters? Or, do we need to run the Pre-Stats
> (motion correction only) on the original data so that the motion
> parameters are generated anew, and then run Stats and Post-Stats?
>
> Thanks in advance for your input!
>
> Cheers,
>
> Heather
>
>
> --
> Heather L. Urry
> Department of Psychology
> Tufts University
> 490 Boston Avenue
> Medford, MA 02155
>
> email: [log in to unmask]
> phone: 617-627-3733
> fax: 617-627-3181
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