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GRIDPP-STORAGE  June 2008

GRIDPP-STORAGE June 2008

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Subject:

Re: dCache upgrade with remote pnfs installation

From:

Matt Doidge <[log in to unmask]>

Reply-To:

Matt Doidge <[log in to unmask]>

Date:

Thu, 12 Jun 2008 11:56:11 +0100

Content-Type:

text/plain

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text/plain (397 lines)

Hello,

One thing I remember from when we split our headnode at Lancaster we
had to have NODE_TYPE=custom on our admin node, to stop the pnfs stuff
from starting.

I've pasted our node_Config below, hope it helps.

cheers,

Matt

#
# $Id: node_config.template,v 1.4.2.1 2006/07/19 10:07:54 tigran Exp $
#
#NODE_TYPE=dummy                 #admin, pool, door or custom
#NODE_TYPE=custom
NODE_TYPE=custom
DCACHE_BASE_DIR=/opt/d-cache
PNFS_ROOT=/pnfs
PNFS_INSTALL_DIR=/opt/pnfs
PNFS_START=no
PNFS_OVERWRITE=no
POOL_PATH=/opt/d-cache/etc
NUMBER_OF_MOVERS=50

# SERVER_ID=domain.name         # defaults to `hostname -d`
SERVER_ID=lancs.ac.uk
#ADMIN_NODE=myAdminNode          # only needed for GridFTP door which
is not on the admin node
ADMIN_NODE=fal-pygrid-20.lancs.ac.uk

#  ----  Services to be started on this node
#    The following services are only started on this node
#    if the corresponding parameter is set to 'yes'.
#    Exeption: The PnfsManager is started on the admin node
#              if the parameter is not specified.
#
GSIDCAP=no
DCAP=no
GRIDFTP=no
#SRM=no
SRM=yes
XROOTD=no



#
# Following variables is for admin node only
#

#  ----  Start the Replica Manager on this node.
#    The variable 'replicaManager' in config/dCacheSetup has to be set
#    to 'yes' on every node of the dCache instance, if the replica manager
#    is started with the following variable
#    Make sure that there is only one replica manager running in a dCache
#    instance.
#
replicaManager=no             # default: no


#  ----  Start the info provider on this node.
#    With this variable, it is possible to install the info provider
#    on a separate node and not on the admin node.
#
#infoProvider=yes                # default: 'yes' on 'admin' node otherwise 'no'
infoProvider=yes


#  ----  Start the statistics module
#
# Make sure that statisticsLocation variable in dCacheSetup file points to
# an existing directory.
#
#statistics=no                # default: 'no'

################################################################################
#                                                                              #
#                                                                              #
#         DO NOT MODIFY THIS PART UNLESS YOU KNOW WHAT YOU ARE DOING           #
#                                                                              #
#                  USED ONLY IF NODE_TYPE=custom                               #
#                                                                              #
################################################################################

#
#  default components of a admin node
#

#
# Location manager. Single instace per dCache installation
# Required.
#
lmDomain=yes

#
# httpd service. Single instace per dCache installation
# optional, recomented
#
httpDomain=yes

#
# pnfs manager. Single instace per dCache installation
# Required.
#
#pnfsManager=no
pnfsManager=no

#
# PoolManager manager (AKA dCacheDomain). Single instace per dCache installation
# Required.
#
poolManager=yes

#
# admin door. Single instace per dCache installation
# optional, recomented
#
adminDoor=yes

#
# utilities ( pinManager and Co.). Single instace per dCache installation
# Required.
#
utilityDomain=yes

#
# directory lookup service. Single instace per dCache installation
# required if at least one dcapDoor is running
#
dirDomain=yes

# gPlazma authentification serive. Single instace per dCache installation
#
#
gPlazmaService=yes                # default: 'no'


2008/6/12 Sergey <[log in to unmask]>:
> Hi
>
> Have to add to our previous email (below) that pnfsDomain always
> started on the head node after /opt/d-cache/bin/dcache start/restart
> though the node was configured in the node_config to run with a remote
> pnfs and not start pnfs on this one. Here is our node_config on the
> head node:
>
> # $Id: node_config.template,v 1.6 2007-06-19 10:04:10 tigran Exp $
> #
> NODE_TYPE=admin                 #admin, pool, door or custom
> DCACHE_HOME=/opt/d-cache
> POOL_PATH=/opt/d-cache/etc
> NUMBER_OF_MOVERS=100
>
> #
> # which namespace in installed?
> #
> # Possible values is chimera or pnfs
> # if nothing is defined or none of above, then pnfs is used
> #
> NAMESPACE=''
> PNFS_ROOT=/pnfs
> PNFS_INSTALL_DIR=/opt/pnfs
> #PNFS_START=yes
> PNFS_START=no
> PNFS_OVERWRITE=no
>
> # SERVER_ID=domain.name         # defaults to `hostname -d`
> SERVER_ID=tier2.hep.manchester.ac.uk
> #ADMIN_NODE=myAdminNode          # only needed for GridFTP door which
> is not on the admin node
> ADMIN_NODE=dcache01.tier2.hep.manchester.ac.uk
> NAMESPACE_NODE=dcache01.tier2.hep.manchester.ac.uk
>
> #  ----  Services to be started on this node
> #    The following services are only started on this node
> #    if the corresponding parameter is set to 'yes'.
> #    Exeption: The PnfsManager is started on the admin node
> #              if the parameter is not specified.
> #
> GSIDCAP=no
> DCAP=no
> GRIDFTP=no
> SRM=yes
> XROOTD=no
>
>
> #
> # Following variables is for admin node only
> #
>
> #  ----  Start the Replica Manager on this node.
> #    The variable 'replicaManager' in config/dCacheSetup has to be set
> #    to 'yes' on every node of the dCache instance, if the replica manager
> #    is started with the following variable
> #    Make sure that there is only one replica manager running in a dCache
> #    instance.
> #
> #replicaManager=no              # default: no
> replicaManager=yes
>
>
> #  ----  Start the info provider on this node.
> #    With this variable, it is possible to install the info provider
> #    on a separate node and not on the admin node.
> #
> #infoProvider=yes                # default: 'yes' on 'admin' node otherwise 'no'
>
>
> #  ----  Start the statistics module
> #
> # Make sure that statisticsLocation variable in dCacheSetup file points to
> # an existing directory.
> #
> #statistics=no                # default: 'no'
>
> ################################################################################
> #                                                                              #
> #                                                                              #
> #         DO NOT MODIFY THIS PART UNLESS YOU KNOW WHAT YOU ARE DOING           #
> #                                                                              #
> #                  USED ONLY IF NODE_TYPE=custom                               #
> #                                                                              #
> ################################################################################
>
> #
> #  default components of a admin node
> #
>
> #
> # Location manager. Single instace per dCache installation
> # Required.
> #
> lmDomain=yes
>
> #
> # httpd service. Single instace per dCache installation
> # optional, recomented
> #
> httpDomain=yes
>
> #
> # pnfs manager. Single instace per dCache installation
> # Required.
> #
> #pnfsManager=yes
> pnfsManager=no
>
> #
> # PoolManager manager (AKA dCacheDomain). Single instace per dCache installation
> # Required.
> poolManager=yes
>
> #
> # admin door. Single instace per dCache installation
> # optional, recomented
> #
> adminDoor=yes
>
> #
> # utilities ( pinManager and Co.). Single instace per dCache installation
> # Required.
> #
> utilityDomain=yes
>
> #
> # directory lookup service. Single instace per dCache installation
> # required if at least one dcapDoor is running
> #
> dirDomain=yes
>
> # gPlazma authentification serive. Single instace per dCache installation
> #
> #
> #gPlazmaService=no                # default: 'no'
> gPlazmaService=yes
>
>
> Sergey
>
> 2008/6/11 Sergey <[log in to unmask]>:
>> Hi
>>
>> We have a splitted dCache head node where the pnfs+psqlpostgre is
>> installed on remote node.
>> On the head node we have
>> PNFS_START=no
>> and
>> pnfsManager=no
>>
>> After server rpm upgrade from 1.8 12p6 to 1.8 15p5 we have had to run
>> /opt/d-cache/install/install.sh script to complete the upgrade. It fails
>> with the following error:
>>
>> [root@dcache01 etc]# /opt/d-cache/install/install.sh
>> INFO:Skipping ssh key generation
>>
>> Checking MasterSetup ./config/dCacheSetup O.k.
>>
>> Sanning dCache batch files
>>
>> Processing adminDoor
>> Processing chimera
>> Processing dCache
>> Processing dir
>> Processing door
>> Processing gPlazma
>> Processing gridftpdoor
>> Processing gsidcapdoor
>> Processing httpd
>> Processing infoProvider
>> Processing lm
>> Processing pnfs
>> Processing pool
>> Processing replica
>> Processing srm
>> Processing statistics
>> Processing utility
>> Processing xrootdDoor
>>
>>
>> Checking Users database .... Ok
>> Checking Security .... Ok
>> Checking JVM ........ Ok
>> Checking Cells ...... Ok
>> dCacheVersion ....... Version production-1-8-0-15p5
>>
>> INFO:Will be mounted to dcache01.tier2.hep.manchester.ac.uk:/fs by
>> dcache-core start-up script.
>> ERROR:The file/directory /pnfs/tier2.hep.manchester.ac.uk is in the way.
>> Please move it out
>> ERROR:of the way and call me again. Exiting.
>>
>> As a result the upgrade is not completed and
>>
>> 1. we still observe the old version on the Admin web page:
>> SRM-dcache01 srm-dcache01Domain 0 3 80 msec 06/11 14:51:18
>> production-1-8-0-12p6(1.151)
>>
>> 2. the srm protocol does not work properly we can srmcp TO the
>> dCache, delete with srmrm and srmcp from it, but the "srmcp TO" hangs
>> on the client
>> side at the very end of operation and then ends with error by timeout:
>>
>> SRMClientV2 : srmPrepareToPut, contacting service
>> httpg://dcache01.tier2.hep.manchester.ac.uk:8443/srm/managerv2
>> Wed Jun 11 16:48:22 BST 2008: srm returned requestToken = -2147098616
>> Wed Jun 11 16:48:22 BST 2008: sleeping 1 seconds ...
>> copy_jobs is not empty
>> Wed Jun 11 16:48:23 BST 2008: no more pending transfers, breaking the loop
>> copying CopyJob, source = file:////bin/bash destination =
>> gsiftp://bohr3931.tier2.hep.manchester.ac.uk:2811//pnfs/tier2.hep.manchester.ac.uk/data/dteam/basht1
>> GridftpClient: memory buffer size is set to 131072
>> GridftpClient: connecting to bohr3931.tier2.hep.manchester.ac.uk on port
>> 2811
>> GridftpClient: gridFTPClient tcp buffer size is set to 0
>> GridftpClient: gridFTPWrite started, source file is
>> java.io.RandomAccessFile@2f0d54 destination path is
>> /pnfs/tier2.hep.manchester.ac.uk/data/dteam/basht1
>> GridftpClient: gridFTPWrite started, destination path is
>> /pnfs/tier2.hep.manchester.ac.uk/data/dteam/basht1
>> GridftpClient: set local data channel authentication mode to None
>> GridftpClient: parallelism: 10
>> GridftpClient: adler32 for file java.io.RandomAccessFile@2f0d54 is 0b6f56d6
>> GridftpClient: waiting for completion of transfer
>> GridftpClient: starting a transfer to
>> /pnfs/tier2.hep.manchester.ac.uk/data/dteam/basht1
>> GridftpClient: DiskDataSink.close() called
>> GridftpClient: gridFTPWrite() wrote 616248bytes
>> GridftpClient: closing client :
>> org.dcache.srm.util.GridftpClient$FnalGridFTPClient@15dd910
>> GridftpClient: closed client
>> execution of CopyJob, source = file:////bin/bash destination =
>> gsiftp://bohr3931.tier2.hep.manchester.ac.uk:2811//pnfs/tier2.hep.manchester.ac.uk/data/dteam/basht1
>> completed
>> SRMClientV2 : put: try # 0 failed with error
>> SRMClientV2 : ; nested exception is:
>> java.net.SocketTimeoutException: Read timed out
>> SRMClientV2 : put: try again
>> SRMClientV2 : sleeping for 10000 milliseconds before retrying
>> SRMClientV2 : put: try # 1 failed with error
>> SRMClientV2 : ; nested exception is:
>> ....
>>
>> Although the file appers in place and can be copied back or deleted with srmrm.
>> Also srmls command does not work at all (just hangs).
>>
>> Does anybody have a suggestion how to complete the upgrade correctly?
>>
>> Thanks
>>
>> Sergey
>>
>>  Manchester Tier2
>>
>

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