Hi - if you'd like to upload your FA directory and the output of
running fslerrorreport we can take a look.
Please upload the files in a single compressed tarfile to
http://www.fmrib.ox.ac.uk/cgi-bin/upload.cgi
And then email me the upload ID.
Cheers, Steve.
On 21 May 2008, at 18:18, Anastasia Ford wrote:
> Hello,
>
> I've started over and run the tbss_2_reg with the -T option.
> However, when I
> run the tbss_3_postreg -S, I get the same errors as before:
>
> using pre-chosen target for registration
> transforming all FA images into MNI152 space
> CON_17-1.FA_FAi
> ** ERROR (nifti_image_read): failed to find header file for
> 'CON_17-1.FA_FAi_to_target_nonlinear'
> ** ERROR: nifti_image_open(CON_17-1.FA_FAi_to_target_nonlinear): bad
> header info
> Error: failed to open file CON_17-1.FA_FAi_to_target_nonlinear
> ERROR: Could not open image CON_17-1.FA_FAi_to_target_nonlinear
> Image Exception : #22 :: Failed to read volume
> CON_17-1.FA_FAi_to_target_nonlinear
> terminate called after throwing an instance of
> 'RBD_COMMON::BaseException'
> /usr/local/fsl/bin/tbss_3_postreg: line 148: 26154 Aborted
> $FSLDIR/bin/applywarp -i $f -o ${f}_to_target_nonlinear_hr -r target
> -w
> ${f}_to_target_nonlinear --rel
>
> The registration of the subject's FA image to the target seems to be
> corrupt
> for all of the subjects included in the analysis, although the
> tbss_2_reg
> does not report any errors. I've looked at the FA maps of each
> subject and
> they display proper characteristics, V1 vector map aligns with the
> major
> white matter pathways.
>
> Sincerely,
> Anastasia
>
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Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
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