Philipp,
Thank you for helping me! Yes, I have compared the smwc*.img files with
the templates in the tmp folder. When segmenting though, I use 1x1x1 mm3
voxel size setting, with the distributed templates, can this cause a
problem?
I followed yor suggestions and checked the unsmoothed images, to me they
seem to be aligned. I attach the CheckReg picture containing (from left to
right, top to bottom):
1. The Grey template from the tpm folder.
2-8. 8 unsmoothed images selected at random.
9-13. The Beta images.
14. The Con image.
15. The Mask image.
Can you find anything weird?
Best regards,
Carl Johan
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