Looks like a was a bit too quick with my reply this morning. When I
came back from the meeting I was rushing to, I noticed that not all is
good with O on OSX.
While bash (terminal or xterm) doesn't freeze, it stops echoing what one
types. Below it the output from hitting enter six times and then typing
ls. Any ideas how to fix this?
As4> Graphics released.
(dyn1210-244) ~: (dyn1210-244) ~: (dyn1210-244) ~: (dyn1210-244) ~:
(dyn1210-244) ~: (dyn1210-244) ~: (dyn1210-244) ~: Desktop/
Documents/ Public/ Downloads/ DepositFiles/
Sites/ My Documents/ More Applications/ Music/
(dyn1210-244) ~:
Andreas
Andreas Förster wrote:
> Hey Raja,
>
> this might not be directly helpful, but...
>
> I remember the same problem. I had to quit the terminal after shutting
> down O (11.0.5, Build 070605, on OSX 5.2). When I tried to recreate
> this problem just now, everything worked fine. Bash returns with the
> prompt after I quit O.
>
> Is your computer up to date?
>
>
> Andreas
>
>
>
> Raja Dey wrote:
>> Hi All,
>> Every time I quit from 'O' (version 11.0.5) my bash terminal
>> freezes. Otherwise 'O' is working fine. Does anyone have the same
>> experience? Is there any solution to this? I am using 13" macbook
>> leopard (OSX 10.5) with intel core 2 duo. I enclosed the text I got on
>> the task window after opening 'O'. anand2:~ rajadey$ ono
>> No dials
>> Mono enabled only
>> Gamepad disabled
>> ODAT environment variable :/usr/local/ono/data/
>> O > O for Mac & Intel processors.
>> O > Use of this program, implies acceptance of the present
>> O > set of conditions of use.
>> O > Contact [log in to unmask] if in doubt.
>> O > O version 11.0.5, Build 070605
>> O > Define an O file (terminate with blank): O > Menu names are
>> not defined.
>> O > Enter file name [/usr/local/ono/data/menu.odb]: O > menu.odb
>> file for O version 11.0.5, 070605
>> O > Database compressed.
>> O > Database compressed.
>> O > Database compressed.
>> O > Database compressed.
>> O > Database compressed.
>> O > Database compressed.
>> O > Forsyth & Wells Scattering Factors Acta Cryst 12 (1959) 412-5
>> O > Startup file was never loaded
>> O > Enter file name [/usr/local/ono/data/startup.odb]: O >
>> startup.odb file for O v0 050807
>> O > Stereochemistry file was never loaded
>> O > Enter file name [/usr/local/ono/data/stereo_chem.odb]: O >
>> stereochemistry amino acids and nucleic acids, Date: 030213
>> O > RNA conformers, 030213
>> O > HIS C O connection
>> O > TYR ATOM/fragment_all corrected
>> O > 021128 Fragment_ALL, modify ATOM records to use \, main-chain
>> RNA fix
>> O > 021127 Connectivty CONNECT_ALL
>> O > 021112 PRO changed to be flexible ring pucker, different
>> side-chain angles
>> O > 021113 AGCU added 2 'dummy' torsion_flexibles to allow
>> build_res C option
>> O > 021113 AGCU sugar pucker flexible on advice of Phil Evans,
>> email 010613
>> O >
>> O > JCS (20030215)
>> O > Modified DNA to include connect_all, centre, atom, and
>> modified whole
>> O > file to use ' instead of * (for CNS output)
>> O > JCS (20061008)
>> O > Finally made stereo_chem_gly the default. Has a lot of sugar
>> information
>> O > JCS (20071008)
>> O > This is the CNS/DNA freindly version of stereo_chem.odb and
>> is default
>> O > for James's custom O database. Here's what it has:
>> O > 1. DNA is default.
>> O > 2. Primes (') instead of stars (*) for the sugars in
>> nucleic acid.
>> O > 3. C5A instead of C7 for the exocyclic methyl in thymidine.
>> O > 4. James's special torsion definitions for building
>> nucleic acids:
>> O > chi, chi', alpha, alpha', beta, beta', gamma, gamma',
>> O > delta, and delta'
>> O > 5. The Ile delta carbon takes the CNS name (CD) instead of
>> the
>> O > standard (CD1)
>> O >
>> O > read ok
>> O > No codes checked
>> O > Connectivity used is : all
>> O > There were 63 residues.
>> O > 646 atoms.
>> O > ODAT in use : /usr/local/ono/data/
>> O > Number of mouse buttons 3
>> O > Default fog values have been defined
>> O > These are in ODB .ogl_light entries 14-16
>> O > Making visibility data structures.
>> O > Making visibility data structures.
>> As4> ......No message from the O administrator........
>> Heap> dial_speed_sgi.odb - gerard kleywegt @ 940120/940825
>> Heap>
>> Heap> toggle between fast dials (e.g., for tor_res) and
>> Heap> slow dials (e.g., while rotating) on SGIs
>> Heap>
>> Heap> type:
>> Heap> menu @fast_dials on on
>> Heap> menu @slow_dials on on
>> Heap> menu @faster on on
>> Heap> menu @slower on on
>> Heap>
>> Heap> Database compressed.
>> Heap>
>> Heap> Datablock file read successfully !
>> Heap>
>> New> Number of mouse buttons 3
>>
>> Thanks...
>> RD
>>
>>
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>>
>
--
I am not stupid. I have read several books.
Salman Rushdie - Midnight's Children
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