Sorry, I meant "atom labels" where I said "atoms". So since you have no
assignments no atom labels are shown. But that atoms are shown greyed
out, as you say.
Wayne
On Wed, 5 Mar 2008, Vicky Higman wrote:
> > If the 'Show Assignments' check button is not checked then the graphics is
> > supposed to show all the atoms. If it is checked it is supposed to show
> > only the assigned atoms. Are people finding this wording confusing or is
> > this not working as stated (we just tried here and it seemed ok)?
> >
>
> Ah - perhaps the difference is between 'Assignments' and 'Atom Labels'.
> I currently don't have anything assigned, so under 'Show Assignments' I
> get no labels at all and all atoms are grey. When 'Show Assignments' is
> unclicked, I get generic 'Atom Labels' (C, N, HA etc.) and atom-type
> colouring (but still no 'Assignments').
>
> Vicky
>
>
> > Tim is not sure if the Pro O is just a wonky coordinate we happened to get
> > (from somewhere) or what.
> >
> > Wayne
> >
> > On Wed, 5 Mar 2008, Vicky Higman wrote:
> >
> >
> >>> Anyone else missing the atom labels from the graphics in the
> >>> Molecules->Residue information popup?
> >>>
> >> Yes, but if you click on 'Show Assignments' they appear - the toggle is
> >> working the wrong way round, I think.
> >>
> >>
> >>> Also, the Gly & Pro representations seem to be mangled with extra
> >>> bonds etc.
> >>>
> >> Looked okay to me (it makes more sense once you have the assignments
> >> switched on and heteroatoms are coloured), but the positioning of the
> >> oxygen in Pro is rather strange.
> >>
> >>
> >>
> >>> I'm also getting
> >>>
> >>> Deprecated: getByKey called with too short key
> >>> from doLoad line 770 in
> >>> /usr/local/ccpnmr/ccpnmr1.0/python/memops/format/xml/XmlIO.py:
> >>> [" obj = oo.getByKey(endMap['class'],useKey)\n"]
> >>> .....
> >>>
> >>>
> >> That always happens and I was told that there is nothing to worry about
> >> here.
> >>
> >> Vicky
> >>
> >>
> >>
> >> --
> >> ****************************************************
> >> Dr. Victoria A. Higman
> >> Leibniz-Institut fuer Molekulare Pharmakologie (FMP)
> >> NMR-Supported Structural Biology
> >> Robert-Roessle-Str. 10
> >> 13125 Berlin
> >> Germany
> >> E-mail: [log in to unmask]
> >> ****************************************************
> >>
> >>
> >
> >
>
> --
> ****************************************************
> Dr. Victoria A. Higman
> Leibniz-Institut fuer Molekulare Pharmakologie (FMP)
> NMR-Supported Structural Biology
> Robert-Roessle-Str. 10
> 13125 Berlin
> Germany
> E-mail: [log in to unmask]
> ****************************************************
>
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