Randomise v0.11 (the version with fsl 3.3) can take MANY hours to do
the cluster-wise correction for multiple comparisions (the
*maxc_tstat* files).
Robert Terwilliger
On Thu, Feb 28, 2008 at 12:14 PM, Walker, Lindsay (NIH/NICHD) [G]
<[log in to unmask]> wrote:
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> I am running TBSS (v1.0) with FSL 3.3, and I successfully ran randomise on
> the FA data. However, I am trying to run randomise on the Trace data now,
> and it has completed all permutations (5000) and has written all of the
> stats files, except the maxc stat files. It has been sitting, incomplete
> for about 16 hours, and has printed no error messages.
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> Has anyone else run into this problem?
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> The command I ran was:
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> randomise –i all_TR_skeletonised –o tbss –m mean_FA_skeleton_mask –d
> design.mat –t design.con –n 5000 –c 3 –V
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> I previously ran the same thing on all_FA_skeletonised and it completed
> without any problems.
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> Thanks.
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> Lindsay Walker.
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