> I am trying to perform a correction at the cluster level when using an
> F-test. From checking the archives I understand that this has not yet
> implemented in SPM5.
> Does anybody know a temporary fix for this. Fmristat
> (http://www.math.mcgill.ca/keith/fmristat/) has been suggested in an
> mail but I could not find the right tools there either.
Well, actually we have written a wrapper program that allows you to
calculate cluster p-values for F-contrasts via fmristat. For more
This toolbox is designed for cluster p-value calculation in VBM-like
analyses (i.e., under non-uniform smoothness or non-stationarity). But
there is a hidden feature in this NS toolbox that allows you to
calculate cluster p-values (t- or F-contrasts). This can be done by
creating a global variable called ASSUME_STATIONARY and setting it to 1.
Here is an excerpt from its documentation.
% A hidden feature of spm_list_nS allows calculation of cluster p-values
% for t- and F-images under stationarity as well. This is implemented by
% the stat_thresh function using the results by Cao . This feature is
% activated by creating a global variable called ASSUME_STATIONARY and
% set it to 1. Otherwise spm_list_nS calculates cluster p-values under
%  Cao J, The Size of the Connected Components of Excursion Sets of
% Chi^2, t, and F Fields. Advances in Applied Probability 31:579-595
Satoru Hayasaka PhD ----------
Assistant Professor, Public Health Sciences & Radiology
Wake Forest University School of Medicine
(ph) +1-336-716-8504 / (fax) +1-336-716-0798
(email) shayasak _at_ wfubmc _dot_ edu