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SPM  January 2008

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Subject:

ERROR: SPM5, Updates_1111, Matlab 7.5, Red Hat Linux Version 5

From:

Luke Stoeckel <[log in to unmask]>

Reply-To:

Luke Stoeckel <[log in to unmask]>

Date:

Wed, 30 Jan 2008 14:56:37 +0000

Content-Type:

text/plain

Parts/Attachments:

Parts/Attachments

text/plain (118 lines)

I was presented with the errors below when installing SPM5 and Updates_1111
on a new machine running Matlab 7.5 in Red Hat Linux Version 5. These errors
occurred after using the DICOM Import feature. I tried recompiling the mex
files, but received this message: Makefile:78: *** Unknowm platform
Linux-i686.  Stop.

Any suggestions are appreciated.

The Matlab error message:

Warning: FINITE is obsolete and will be removed in future versions. Use
ISFINITE instead.
> In spm_select>selector at 113
  In spm_select at 97
  In spm_jobman>file_select at 875
  In spm_jobman>run_in_current_node1 at 698
  In spm_jobman>run_in_current_node1 at 706
  In spm_jobman>start_node1 at 668
  In spm_jobman>start_node1 at 674
  In spm_jobman>start_node1 at 674
  In spm_jobman>start_node at 630
  In spm_jobman>run_in_current_node at 608
  In spm_jobman>click_options_box at 594
Warning: FINITE is obsolete and will be removed in future versions. Use
ISFINITE instead.
> In spm_select>click_file_box at 661
  In spm_select>selector at 429
  In spm_select at 97
  In spm_jobman>file_select at 875
  In spm_jobman>run_in_current_node1 at 698
  In spm_jobman>run_in_current_node1 at 706
  In spm_jobman>start_node1 at 668
  In spm_jobman>start_node1 at 674
  In spm_jobman>start_node1 at 674
  In spm_jobman>start_node at 630
  In spm_jobman>run_in_current_node at 608
  In spm_jobman>click_options_box at 594
Warning: FINITE is obsolete and will be removed in future versions. Use
ISFINITE instead.
> In spm_select>click_file_box at 671
  In spm_select>selector at 429
  In spm_select at 97
  In spm_jobman>file_select at 875
  In spm_jobman>run_in_current_node1 at 698
  In spm_jobman>run_in_current_node1 at 706
  In spm_jobman>start_node1 at 668
  In spm_jobman>start_node1 at 674
  In spm_jobman>start_node1 at 674
  In spm_jobman>start_node at 630
  In spm_jobman>run_in_current_node at 608
  In spm_jobman>click_options_box at 594
Warning: FINITE is obsolete and will be removed in future versions. Use
ISFINITE instead.
> In spm_select>selector at 113
  In spm_select at 97
  In spm_jobman>file_select at 875
  In spm_jobman>run_in_current_node1 at 698
  In spm_jobman>run_in_current_node1 at 706
  In spm_jobman>start_node1 at 668
  In spm_jobman>start_node1 at 674
  In spm_jobman>start_node1 at 674
  In spm_jobman>start_node at 630
  In spm_jobman>run_in_current_node at 608
  In spm_jobman>click_options_box at 594
Warning: FINITE is obsolete and will be removed in future versions. Use
ISFINITE instead.
> In spm_select>select_rec at 1242
  In spm_select>selector at 429
  In spm_select at 97
  In spm_jobman>file_select at 875
  In spm_jobman>run_in_current_node1 at 698
  In spm_jobman>run_in_current_node1 at 706
  In spm_jobman>start_node1 at 668
  In spm_jobman>start_node1 at 674
  In spm_jobman>start_node1 at 674
  In spm_jobman>start_node at 630
  In spm_jobman>run_in_current_node at 608
  In spm_jobman>click_options_box at 594
--------------------------
Running "DICOM Import"
   Changing directory to: /home/RWeller/Desktop/R21_raw/ER/Session_1/Raw/ER01_1/
Warning: Unknown VR [32  10] in
"/home/RWeller/Desktop/R21_raw/ER/Session_1/Raw/ER01_1//MR.1.3.46.670589.11.10123.5.0.3848.2008011816411185310.dcm"
(offset=4861).
> In spm_dicom_headers>read_dicom at 182
  In spm_dicom_headers>readdicomfile at 66
  In spm_dicom_headers at 25
  In spm_config_dicom>convert_dicom at 95
  In spm_jobman>run_struct1 at 1474
  In spm_jobman>run_struct1 at 1482
  In spm_jobman>run_struct1 at 1482
  In spm_jobman>run_struct at 1436
Warning: Unknown VR [0  65533] in
"/home/RWeller/Desktop/R21_raw/ER/Session_1/Raw/ER01_1//MR.1.3.46.670589.11.10123.5.0.3848.2008011816411185310.dcm"
(offset=4873).
> In spm_dicom_headers>read_dicom at 182
  In spm_dicom_headers>readdicomfile at 66
  In spm_dicom_headers at 25
  In spm_config_dicom>convert_dicom at 95
  In spm_jobman>run_struct1 at 1474
  In spm_jobman>run_struct1 at 1482
  In spm_jobman>run_struct1 at 1482
  In spm_jobman>run_struct at 1436
Warning: Don't know how to handle VR of '\0\0'
> In spm_dicom_headers>read_tag at 309
  In spm_dicom_headers>read_dicom at 192
  In spm_dicom_headers>readdicomfile at 66
  In spm_dicom_headers at 25
  In spm_config_dicom>convert_dicom at 95
  In spm_jobman>run_struct1 at 1474
  In spm_jobman>run_struct1 at 1482
  In spm_jobman>run_struct1 at 1482
  In spm_jobman>run_struct at 1436
Error running job:
Reference to non-existent field 'length'.
--------------------------
Done.

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