Gwenaelle,
Thanks for the follow up. Beyond upgrading to Leopard from Tiger, I
do not believe I have altered my system. Currently, when running
fslvbm_2_template -a I get the series of error files you mention. The
*e file are all the same:
/bin/sh: line 1: -n: command not found
The *.o files are blank.
I have not set up the SGE system yet. That is on my To Do list.
Cliff
#################################
Clifford Smith, PhD, ABPP-CN
Board Certified in Clinical Neuropsychology
Assistant Professor of Behavioral Sciences
Rush University Medical Center
O: (312) 942-2893
F: (312) 942-4990
On Jan 7, 2008, at 8:30 AM, Gwenaëlle DOUAUD wrote:
> Dear Cliff and Christopher,
>
> the output you describe here is completely normal. It
> just indicates, if you have an SGE system, which job
> number is attributed for each task (segmentation,
> registration etc.). If you do not have any SGE system,
> that should work fine as well but take longer as it
> will do all the subjects in series rather than in
> parallel.
> What I do not understand is why it used to work and it
> does not anymore. Have you really run the same kind of
> analysis on the *same* computer? Are there any useful
> information in any *.o* or *.e* files in FAi?
> Especially, if something went wrong (apparently it did
> as you have no template_4D_GM), you should have some
> error messages in either fslvbm2a.e7378*,
> fslvbm2b.e8438e* or fslvbm2c.e11568*.
>
> In any case, please bear in mind that it can take
> *long* to obtain the 4D image if you don't have an SGE
> system and a lot of subjects.
>
> Cheers,
> Gwenaelle
>
>
> --- Cliff Smith <[log in to unmask]> a écrit :
>
>> I'm also running into similar output with
>> fslvbm_2_template. I've ran VBM scripts
>> successfully in the
>> past, and now get a the same output but there is no
>> template_4D_GM. Similar difficulties with TBSS.
>> Running FSL on two Macs (both with Leopard) produces
>> similar output.
>>
>> Running segmentation: ID=7378
>> Running registration: ID=8438
>> Creating template: ID=11568
>> Study-specific template will be created, when
>> complete, check FAi/template_4D_GM as a movie loop
>> in fslview
>>
>
>
>
>
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