Hey all,
I ran TBSS with our macaque data and everything seemed to work well, except
that the FWE-corrected images do not show anything. It is possible that no
differences survived after the correction, but I wanted to make sure it
wasn't a scripting error. There were 10 control subjects and 9 experimental
subjects, and I am just interested in whether or not there are differences
between the two groups. I am attaching all of the command lines that I
used. Thanks in advance for your help!
Brittany
##The following were run in a directory containing all of the subjects' images (named CON_01_dti_data_FA.nii.gz…. CON_10_dti_data_FA.nii.gz and MAL_01_dti_data_FA.nii.gz…. MAL_09_dti_data_FA.nii.gz)
tbss_1_preproc \
tbss_2_reg –n \
sh tbss_3_postreg_noMNI.sh -S target.nii.gz
tbss_4_prestats 2000
design_ttest2 design 10 9
randomise -I all_FA_skeletonised.nii.gz -o tbss -m mean_FA_skeleton_mask -d design.mat -t design.con -n 5000 -c 3 -V
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