I saw the same error message. I do not know any "bad" consequence for
the next step.
On Jan 22, 2008, at 8:54 PM, Sheu, Yi-Shin wrote:
> Hello:
>
> I got this error message when I first upgraded to FSL4.0, and after
> several experiments, I found out it is because I attempted to run the
> tbss_2_reg command simultaneously on several terminals.
>
> FSL4.0 requires SGE to run parallel. As for the older version, it
> is ok
> to run the registration at several terminals at once by simply
> typing the
> same command. Not ok with FSL4.0.
>
> See if it applies to your case.
>
>
> Yi-Shin
>
>> Dear FSL users,
>>
>> While running the command tbss_2_reg -T, I received the following
>> error
>> after a few days of
>> processing:
>>
>> sed: can't read .commands: No such file or directory
>>
>> The program had already created *FA_FAi_to_target_affine.dof,
>> *FA_FAi_to_target_nonlinear.dof
>> *FA_FAi_to_target_nonlinear.msf,
>> *_FA_FAi_to_target_nonlinear.nii.gz on 21
>> subjects when it
>> stopped. Interestingly, when I re-ran it, it stopped at a different
>> location (i.e., after the 23rd
>> subject). Also of note is when I attempted to run this command on
>> additional computers after
>> starting one successfully, I receive the following error
>> immediately and I
>> am unable to run the
>> program:
>>
>> wc: .commands: No such file or directory
>>
>> Incidentally, these subjects have been registered before. I am only
>> re-registering them because I
>> am running a different analysis where only a sub-group of the
>> original set
>> is included. Is there a
>> better approach for doing re-analyses like these? For instance,
>> can I
>> simply take subjects out of
>> analyses by designating them with zeroes in the contrast matrix?
>>
>> Thanks in advance for your suggestions,
>> Francesca
>>
>
>
> Sheu, Yi-Shin
> Research Assistant
> McLean Hospital
> Developmental Biopsychiatry Research Program
> Tel: 617-855-2942
> Fax: 617-855-3712
> email: [log in to unmask]
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