ah ... I just figured out that applyxfm4D is an independent program and
not a FILRT option!
sorry about the last question
thanks
-Luis
On Mon, 21 Jan 2008, Mark Jenkinson wrote:
> Hi,
>
> Flirt will actually take a matrix and a 4D input file and realign
> all the constituent 3D volumes in the 4D file using that matrix.
>
> Alternatively, there is applyxfm4D if you have a different
> matrix for each image.
>
> All the best,
> Mark
>
>
>
> On 21 Jan 2008, at 17:53, Steve Smith wrote:
>
>> Hi - I don't think so sorry - you'll just have to write a 3-line script
>> ;-)
>> Cheers.
>>
>>
>> On 21 Jan 2008, at 17:52, Luis Hernandez wrote:
>>
>>> Dear all,
>>>
>>> Is there a way to realign a time series using precomputed realignment
>>> parameters? I know that you can use FLIRT to do a single image with a
>>> single transformation matrix, but ... can you do a whole time series
>>> without having to break it up into individual files?
>>>
>>> My motivation is to realign a time series of phase images using
>>> realignment parameters computed from the corresponding magnitude time
>>> series.
>>>
>>> thanks a lot!
>>>
>>> -Luis
>>>
>>
>>
>> ---------------------------------------------------------------------------
>> Stephen M. Smith, Professor of Biomedical Engineering
>> Associate Director, Oxford University FMRIB Centre
>>
>> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
>> +44 (0) 1865 222726 (fax 222717)
>> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
>> ---------------------------------------------------------------------------
>>
>
>
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