Hi,
in order to spm2 aal toolbox works fine with SPM5 you should also comment lines
330-333 of gin_clusters_plabels.m:
% if defaults.analyze.flip
% defaults.analyze.flip = 0;
% flag_flip = 1;
% end
in which the default flip value is asked. You should make sure if your images
are R/L o L/L and set it in line 328:
flag_flip = 0; or
flag_flip = 1;
depending on the case
Yours
Carles Falcon
IDIBAPS-Hospital Clinic of Barcelona
University of Barcelona
Missatge de Rodolphe <[log in to unmask]>:
> Hello,
>
> i just want to add something about the aal toolbox. An error occurs, if the
> path of the labelised image you want to chose contains a space. (I mean the
> chain character, for example "c:\my work\aal\image.img" wont work cause
> there is a blank between my and work )
> Cheers,
>
> Rodolphe Nenert
> Doctoral student
> Inserm U825, Toulouse
> France.
>
> 2007/12/16, Claus Lamm <[log in to unmask]>:
> >
> > On So, 16.12.2007, 00:48, [log in to unmask] wrote:
> > > Hi everyone,
> > >
> > > I am sure the answer I seek is somewhere in the archives, I just does
> > not
> > > seem to be able to find it...
> > >
> > > I am using Spm5 and just am at stage when I need to use Automated
> > > Anatomical Labelling. The Spm website offers AAL for Spm2, which I
> > > downloaded, yet is does not seem to be able to produce the labels.
> > >
> > > Does anyone know where I can find AAL compatible with Spm5? Or, does
> > > anyone use any other system (and where does it live) to get the
> > anatomical
> > > names for the blobs?
> > >
> > > Paul
> > >
> > >
> > Paul:
> >
> > I recently used it and it worked fine, but using Windows only after I
> > replaced the .mat files with the ones on the AAL installation site
> > (bottom of page, windows modifications,
> > http://www.cyceron.fr/freeware/
> >
> > Alternatively you might want to use the Anatomy Toolbox which also has an
> > anatomical labeling function at least for parts of the brain
> >
> > hope this helps,
> > Claus
> >
>
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