JiscMail Logo
Email discussion lists for the UK Education and Research communities

Help for SPM Archives


SPM Archives

SPM Archives


SPM@JISCMAIL.AC.UK


View:

Message:

[

First

|

Previous

|

Next

|

Last

]

By Topic:

[

First

|

Previous

|

Next

|

Last

]

By Author:

[

First

|

Previous

|

Next

|

Last

]

Font:

Proportional Font

LISTSERV Archives

LISTSERV Archives

SPM Home

SPM Home

SPM  December 2007

SPM December 2007

Options

Subscribe or Unsubscribe

Subscribe or Unsubscribe

Log In

Log In

Get Password

Get Password

Subject:

Re: Problems with SPM5 on OSX

From:

Torben Ellegaard Lund <[log in to unmask]>

Reply-To:

Torben Ellegaard Lund <[log in to unmask]>

Date:

Tue, 11 Dec 2007 06:53:27 +0100

Content-Type:

text/plain

Parts/Attachments:

Parts/Attachments

text/plain (145 lines)

Use the tar comand in a terminal window instead when you install the  
update.

Best
Torben


On 11/12/2007, at 02.20, Dien, Joseph wrote:

> There are also two other problems that tend to come up on OS X  
> (although I'm running 7.4, not 7.5, so I can't be sure about what  
> you are getting).  One problem is that folks sometimes just drag the  
> updated folders into the SPM folder.  This causes problems because  
> the update has the same folder structure as the SPM installation but  
> only the files that have been updated.  So if the folder originally  
> had ten files and only one was updated, then after dragging the  
> update folder over and replacing the folder, now there is only the  
> one new file in the folder and the other nine unchanged files have  
> been deleted.  This comes up with OS X because the archiving program  
> usually used by OS X users (stuffit expander) doesn't take care of  
> incremental updates for you.
>
> The other thing that has come up in the past is that stuffit  
> expander was corrupting the tar files.  I don't know if the current  
> one still has that problem (and I don't know which version you are  
> using).  Anyway, I would check the SPM archives.  There have been  
> postings on alternatives to stuffit expander.
>
> Anyway, I can say that I've been using SPM5 on a G5 Mac and matlab  
> 7.4 without any problems.
>
> Cheers!
>
> Joe
>
>
> -----Original Message-----
> From: SPM (Statistical Parametric Mapping) on behalf of Greig de  
> Zubicaray
> Sent: Mon 12/10/2007 5:51 PM
> To: [log in to unmask]
> Subject: Re: [SPM] Problems with SPM5 on OSX
>
> Hi Amy,
>
> Try recompiling the mex files using the Makefile in the spm5/src
> directory.
>
> Instructions are here:
>
> http://en.wikibooks.org/wiki/SPM
>
> hope this helps,
>
> Greig
>
>
> On 11/12/2007, at 5:36 AM, Amy Janes wrote:
>
>> Hi All,
>>
>> I am trying to run SPM 5 (unpacked using stuffitexpander) on OSX
>> Leopard using Matlab 7.5.0 (R2007b) and I can't seem to get it to
>> work.
>>
>>
>> Before adding in the updates I get the following errors:
>> Loading of toolbox /Users/amyjanes/Desktop/spm5.1/toolbox/
>> spm_config_sendmail.m failed.
>>
>>
>> I am unable to view any of the images provided in the sample data:
>> Running "Display Image"
>> Image "/Users/amyjanes/Lab/Practice SPM5/Auditory/MoAEpilot/fM00223/
>> fM00223_007.img" can not be resampled
>> Image "/Users/amyjanes/Lab/Practice SPM5/Auditory/MoAEpilot/fM00223/
>> fM00223_007.img" can not be resampled
>> Warning: FINITE is obsolete and will be removed in future versions.
>> Use ISFINITE instead.
>>> In spm_select>selector at 113
>> In spm_select at 97
>> In spm_jobman>run_ui at 2112
>> In spm_jobman>start_node1 at 668
>> In spm_jobman>start_node1 at 674
>> In spm_jobman>start_node1 at 674
>> In spm_jobman>start_node at 630
>> In spm_jobman>serial at 2034
>> In spm_jobman at 70
>>
>>
>> I am also unable to realign the data or really do anything.
>>
>> when selecting the display option and when I add the updates my
>> problems become worse in that I can't even start the fmri section of
>> spm.
>>
>> These are the errors I get with the added updates:
>>
>> ___  ____  __  __
>> / __)(  _ \(  \/  )
>> \__ \ )___/ )    (   Statistical Parametric Mapping
>> (___/(__)  (_/\/\_)  SPM5 - http://www.fil.ion.ucl.ac.uk/spm/
>>
>>
>>
>> Initialising SPM..??? Attempt to reference field of non-structure
>> array.
>>
>> Error in ==> spm at 404
>> set(findobj(Fmenu,'Tag', 'Toolbox'),'String',{'Toolbox:' xTB.name });
>>
>> Error in ==> spm at 356
>> Fmenu  = spm('CreateMenuWin','off');fprintf('.');
>>
>> ??? Error while evaluating uicontrol Callback
>>
>> Any suggestions as to how I could fix all of this?
>>
>> Thanks!
>> The information transmitted in this electronic communication is
>> intended only
>> for the person or entity to whom it is addressed and may contain
>> confidential
>> and/or privileged material. Any review, retransmission,
>> dissemination or other
>> use of or taking of any action in reliance upon this information by
>> persons or
>> entities other than the intended recipient is prohibited. If you
>> received this
>> information in error, please contact the Compliance HelpLine at
>> 800-856-1983 and
>> properly dispose of this information.
>>
>>
>
> __
> Dr Greig de Zubicaray
> Senior Research Fellow
> fMRI Laboratory, Centre for Magnetic Resonance
> University of Queensland, QLD 4072, Australia
> Tel: (+617) 3365 4100 (Office)
>        (+617) 3365 4250 (B106, Ritchie Building)
> Fax: (+617) 3365 3833
> fMRI Lab Page: http://www.fmrilab.net

Top of Message | Previous Page | Permalink

JiscMail Tools


RSS Feeds and Sharing


Advanced Options


Archives

October 2019
September 2019
August 2019
July 2019
June 2019
May 2019
April 2019
March 2019
February 2019
January 2019
December 2018
November 2018
October 2018
September 2018
August 2018
July 2018
June 2018
May 2018
April 2018
March 2018
February 2018
January 2018
December 2017
November 2017
October 2017
September 2017
August 2017
July 2017
June 2017
May 2017
April 2017
March 2017
February 2017
January 2017
December 2016
November 2016
October 2016
September 2016
August 2016
July 2016
June 2016
May 2016
April 2016
March 2016
February 2016
January 2016
December 2015
November 2015
October 2015
September 2015
August 2015
July 2015
June 2015
May 2015
April 2015
March 2015
February 2015
January 2015
December 2014
November 2014
October 2014
September 2014
August 2014
July 2014
June 2014
May 2014
April 2014
March 2014
February 2014
January 2014
December 2013
November 2013
October 2013
September 2013
August 2013
July 2013
June 2013
May 2013
April 2013
March 2013
February 2013
January 2013
December 2012
November 2012
October 2012
September 2012
August 2012
July 2012
June 2012
May 2012
April 2012
March 2012
February 2012
January 2012
December 2011
November 2011
October 2011
September 2011
August 2011
July 2011
June 2011
May 2011
April 2011
March 2011
February 2011
January 2011
December 2010
November 2010
October 2010
September 2010
August 2010
July 2010
June 2010
May 2010
April 2010
March 2010
February 2010
January 2010
December 2009
November 2009
October 2009
September 2009
August 2009
July 2009
June 2009
May 2009
April 2009
March 2009
February 2009
January 2009
December 2008
November 2008
October 2008
September 2008
August 2008
July 2008
June 2008
May 2008
April 2008
March 2008
February 2008
January 2008
December 2007
November 2007
October 2007
September 2007
August 2007
July 2007
June 2007
May 2007
April 2007
March 2007
February 2007
January 2007
2006
2005
2004
2003
2002
2001
2000
1999
1998


JiscMail is a Jisc service.

View our service policies at https://www.jiscmail.ac.uk/policyandsecurity/ and Jisc's privacy policy at https://www.jisc.ac.uk/website/privacy-notice

Secured by F-Secure Anti-Virus CataList Email List Search Powered by the LISTSERV Email List Manager