JiscMail Logo
Email discussion lists for the UK Education and Research communities

Help for GRIDPP-STORAGE Archives


GRIDPP-STORAGE Archives

GRIDPP-STORAGE Archives


GRIDPP-STORAGE@JISCMAIL.AC.UK


View:

Message:

[

First

|

Previous

|

Next

|

Last

]

By Topic:

[

First

|

Previous

|

Next

|

Last

]

By Author:

[

First

|

Previous

|

Next

|

Last

]

Font:

Proportional Font

LISTSERV Archives

LISTSERV Archives

GRIDPP-STORAGE Home

GRIDPP-STORAGE Home

GRIDPP-STORAGE  December 2007

GRIDPP-STORAGE December 2007

Options

Subscribe or Unsubscribe

Subscribe or Unsubscribe

Log In

Log In

Get Password

Get Password

Subject:

Re: PNFS problems after postgres disaster

From:

Greig Alan Cowan <[log in to unmask]>

Reply-To:

Greig Alan Cowan <[log in to unmask]>

Date:

Fri, 7 Dec 2007 12:01:22 +0000

Content-Type:

text/plain

Parts/Attachments:

Parts/Attachments

text/plain (164 lines)

Yes, I think this is your only option now. The developers are being less 
than helpful.

As for tidying things up, I think it's going to be messy. WE should be 
able to use something like this to find the pnfsids that are not related 
to any file in the namespace.

http://www.sysadmin.hep.ac.uk/svn/fabric-management/dcache/pnfs/remove-orphan-files.sh

Greig

On 07/12/07 11:21, Matt Doidge wrote:
> Hello,
> 
> I've made extensive use of the single-user mode of postgres whilst
> attempting to repair our databases, and I couldn't find any glaring
> errors or problems looking into these things-but then again I wouldn't
> nessicerily have done as the postgres backend to pnfs has always been
> something opaque and mysterious to me.
> 
> After much deliberation we've decided to go with the rollback option,
> our best "customers" would rather have us back in action and needing
> to be reseeded then sitting around being useless. I'm going to keep
> the bust database we have and see if something can be salvaged from
> it, maybe some entries can be translated over? Maybe I'm just being
> overly optimisitic. I'll do the rollback after lunch, to give time for
> people to object if they think it's a very very bad idea or present me
> with other options, but right now I don't think we have any.
> 
> One thing's for certain, I'll never blindly assume that my backups are
> working fine again.
> 
> Thanks for the help Greig,
> 
> Matt
> 
> On 07/12/2007, Greig A Cowan <[log in to unmask]> wrote:
>> Matt,
>>
>> Have you considered the approach of running in single-user mode with just
>> one of the broken databases?
>>
>> http://www.postgresql.org/docs/8.1/static/app-postgres.html
>>
>> postgres -D /var/lib/pgsql/data/ data1
>>
>> This might give you some ability to try and fix things.
>>
>> As you will know, I've also submitted another ticket to dCache support.
>>
>> Greig
>>
>>
>>
>> On Fri, 7 Dec 2007, Matt Doidge wrote:
>>
>>> Hello,
>>>
>>> Just in case the worst happens and we can't salvage pnfs from what's
>>> our current postgres and have to use the 3.5 month old backup, would
>>> there be guidelines as to how to go about sorting out the horrid mess
>>> that would leave. There's guidelines to sort things out from the point
>>> of view of a pool snuffing it, but nothing for database failures
>>> (largely as such extreme database related errors shouldn't happen due
>>> to regular backups being in place).
>>>
>>> The other piece of advice is, at what point do you should I just give
>>> up and start dusting off the old back-up? We've been down since
>>> Tuesday. How much downtime is a 3.5 month data rollback worth? Maybe I
>>> should put this question to the major VOs we support (aka atlas)?
>>>
>>> As you can tell I'm a little confused and overwhelmed, and mightily frustrated.
>>>
>>> cheers,
>>> Matt
>>>
>>> On 06/12/2007, Matt Doidge <[log in to unmask]> wrote:
>>>> Hello,
>>>>
>>>> All my empty files are in place. Postgres is back up and running- I
>>>> can connect to it and poke around. However there could have been
>>>> dataloss, and so when pnfs looks into postgres for its gubbins all it
>>>> is perhaps seeing is gobblygook and thus not be able to initialise
>>>> properly. However that's just a theory that I so hope is wrong.
>>>>
>>>> I'll see if I can dig up a spare node to see if I can get it to work
>>>> elsewhere, but I'm not sure we've got any spare machines laying about
>>>> the place. It's worth a try, at the moment I'm just banging my head
>>>> against a wall, which isn't getting the job done sadly.
>>>>
>>>> If anyone knows of any postgres queries I could issue that would test
>>>> how postgres is looking to pnfs then that would be great.
>>>>
>>>> cheers,
>>>> Matt
>>>> On 06/12/2007, Greig Alan Cowan <[log in to unmask]> wrote:
>>>>> You've got empty file corresponding to each database in this directory?
>>>>>
>>>>> /opt/pnfsdb/pnfs/databases
>>>>>
>>>>> Are you sure that postgres is back up and running? Can you really
>>>>> connect to it?
>>>>>
>>>>> I don't know what causes the enabled (x) output, but it probably implies
>>>>> a problem with postgres. I've only seen it once before.
>>>>>
>>>>> Greig
>>>>>
>>>>> On 06/12/07 08:35, Matt Doidge wrote:
>>>>>> Thanks for the reply Greig,
>>>>>>
>>>>>> The /opt/pnfsdb/pnfs/info files all seem present and correct. The
>>>>>> output of a mdb show gives
>>>>>> much the same as usual, except  the status column for each reads
>>>>>> "enabled (x)". It should be noted that all the bust databases are also
>>>>>> all the larger ones, of the databases that work only babar has any
>>>>>> significant amount of data.
>>>>>>
>>>>>> Posting to both users and support was a little cheeky, but I'm trying
>>>>>> to maximise coverage in the hopes of maximising my chances of finding
>>>>>> a solution that doesn't involve losing 3 months of data, desperate
>>>>>> times call for desperate postings!
>>>>>>
>>>>>> cheers,
>>>>>> Matt
>>>>>>
>>>>>> On 06/12/2007, Greig A Cowan <[log in to unmask]> wrote:
>>>>>>> Hi Matt,
>>>>>>>
>>>>>>> You've probably checked this already, but what are the contents of
>>>>>>>
>>>>>>> /opt/pnfsdb/pnfs/info
>>>>>>>
>>>>>>> There should be a file for each database, with contents like:
>>>>>>>
>>>>>>> $ cat D-0000
>>>>>>> admin:0:r:enabled:/opt/pnfsdb/pnfs/databases/admin
>>>>>>>
>>>>>>> Also what does this command give you? It should be something like that
>>>>>>> below.
>>>>>>>
>>>>>>> $ /opt/pnfs/tools/mdb show
>>>>>>>     ID   Name         Type    Status       Path
>>>>>>>   ----------------------------------------------
>>>>>>>     0    admin         r     enabled (r)   /opt/pnfsdb/pnfs/databases/admin
>>>>>>>     1    data1         r     enabled (r)   /opt/pnfsdb/pnfs/databases/data1
>>>>>>> ...
>>>>>>>
>>>>>>> Also, you should note that you should typically just post to the
>>>>>>> user-forum or support@dcache (the developers get a bit narky when people
>>>>>>> post to both ;) )
>>>>>>>
>>>>>>> Cheers,
>>>>>>> Greig
>>>>>>>
>> --
>> ========================================================================
>> Dr Greig A Cowan                         http://www.ph.ed.ac.uk/~gcowan1
>> School of Physics, University of Edinburgh, James Clerk Maxwell Building
>>
>> TIER-2 STORAGE SUPPORT PAGES: http://wiki.gridpp.ac.uk/wiki/Grid_Storage
>> ========================================================================
>>

Top of Message | Previous Page | Permalink

JiscMail Tools


RSS Feeds and Sharing


Advanced Options


Archives

April 2024
March 2024
February 2024
January 2024
December 2023
November 2023
October 2023
September 2023
August 2023
July 2023
June 2023
May 2023
April 2023
March 2023
February 2023
January 2023
December 2022
November 2022
October 2022
September 2022
August 2022
July 2022
June 2022
May 2022
April 2022
March 2022
February 2022
January 2022
December 2021
November 2021
October 2021
September 2021
August 2021
July 2021
June 2021
May 2021
April 2021
March 2021
February 2021
January 2021
December 2020
November 2020
October 2020
September 2020
August 2020
July 2020
June 2020
May 2020
April 2020
March 2020
February 2020
January 2020
December 2019
November 2019
October 2019
September 2019
August 2019
July 2019
June 2019
May 2019
April 2019
March 2019
February 2019
January 2019
December 2018
November 2018
October 2018
September 2018
August 2018
July 2018
June 2018
May 2018
April 2018
March 2018
February 2018
January 2018
December 2017
November 2017
October 2017
September 2017
August 2017
July 2017
June 2017
May 2017
April 2017
March 2017
February 2017
January 2017
December 2016
November 2016
October 2016
September 2016
August 2016
July 2016
June 2016
May 2016
April 2016
March 2016
February 2016
January 2016
December 2015
November 2015
October 2015
September 2015
August 2015
July 2015
June 2015
May 2015
April 2015
March 2015
February 2015
January 2015
December 2014
November 2014
October 2014
September 2014
August 2014
July 2014
June 2014
May 2014
April 2014
March 2014
February 2014
January 2014
December 2013
November 2013
October 2013
September 2013
August 2013
July 2013
June 2013
May 2013
April 2013
March 2013
February 2013
January 2013
December 2012
November 2012
October 2012
September 2012
August 2012
July 2012
June 2012
May 2012
April 2012
March 2012
February 2012
January 2012
December 2011
November 2011
October 2011
September 2011
August 2011
July 2011
June 2011
May 2011
April 2011
March 2011
February 2011
January 2011
December 2010
November 2010
October 2010
September 2010
August 2010
July 2010
June 2010
May 2010
April 2010
March 2010
February 2010
January 2010
December 2009
November 2009
October 2009
September 2009
August 2009
July 2009
June 2009
May 2009
April 2009
March 2009
February 2009
January 2009
December 2008
November 2008
October 2008
September 2008
August 2008
July 2008
June 2008
May 2008
April 2008
March 2008
February 2008
January 2008
December 2007
November 2007
October 2007
September 2007
August 2007
July 2007
June 2007
May 2007
April 2007
March 2007
February 2007
January 2007
December 2006
November 2006
October 2006
September 2006
August 2006
July 2006
June 2006
May 2006
April 2006
March 2006
February 2006
January 2006
December 2005
November 2005
October 2005
September 2005
August 2005
July 2005
June 2005
May 2005
April 2005
March 2005
February 2005
January 2005
December 2004
November 2004
October 2004
September 2004
August 2004
July 2004
June 2004


JiscMail is a Jisc service.

View our service policies at https://www.jiscmail.ac.uk/policyandsecurity/ and Jisc's privacy policy at https://www.jisc.ac.uk/website/privacy-notice

For help and support help@jisc.ac.uk

Secured by F-Secure Anti-Virus CataList Email List Search Powered by the LISTSERV Email List Manager