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FSL  November 2007

FSL November 2007

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Subject:

Re: feeds fmri.nii.gz data error

From:

Steve Smith <[log in to unmask]>

Reply-To:

FSL - FMRIB's Software Library <[log in to unmask]>

Date:

Thu, 15 Nov 2007 13:36:36 +0000

Content-Type:

text/plain

Parts/Attachments:

Parts/Attachments

text/plain (280 lines)

Hi - I'm not sure exactly which of our Linux downloads is most  
suitable for this Mandriva OS, but it looks like you have only tried  
the 32-bit downloads, and your machine is probably 64-bit - so I would  
try maybe the Centos5-64 FSL download.

Cheers, Steve.



On 15 Nov 2007, at 13:30, Heather Urry wrote:

> Hi Steve,
>
> Thanks so much for your reply.  I'm running FSL 4.0.2 on Mandriva  
> 2008.
> Mandriva details, in case it's meaningful to you: "2.6.22.9- 
> desktop-1mdv
> ([log in to unmask]) (gcc version 4.2.2 20070909  
> (prerelease)
> (4.2.2-0.RC.1mdv2008.0)) #1 SMP Wed Sep 26 22:36:49 CEST 2007".
>
> The output of fslerrorreport follows.
>
> Best,
>
> Heather
>
> ***
>
>
> ######################################################################
> #### MACHINE INFORMATION
> ######################################################################
>
> Uname:
> Linux
>
> df:
> Filesystem           1K-blocks      Used Available Use% Mounted on
> /dev/sda6            693616848   8164028 685452820   2% /home
>
> quota:
>
> Memory and Swap info:
> MemTotal:      4053128 kB
> MemFree:        149184 kB
> Buffers:         88640 kB
> Cached:        3296672 kB
> SwapCached:          0 kB
> Active:         864168 kB
> Inactive:      2690808 kB
> SwapTotal:     7494280 kB
> SwapFree:      7494144 kB
> Dirty:               0 kB
> Writeback:           0 kB
> AnonPages:      120724 kB
> Mapped:          27336 kB
> Slab:           295952 kB
> SReclaimable:   247404 kB
> SUnreclaim:      48548 kB
> PageTables:       2704 kB
> NFS_Unstable:        0 kB
> Bounce:              0 kB
> CommitLimit:   9520844 kB
> Committed_AS:   146512 kB
> VmallocTotal: 34359738367 kB
> VmallocUsed:    325424 kB
> VmallocChunk: 34359411707 kB
> HugePages_Total:     0
> HugePages_Free:      0
> HugePages_Rsvd:      0
> Hugepagesize:     2048 kB
>
> ######################################################################
> #### ENVIRONMENT INFORMATION
> ######################################################################
>
> FSLMULTIFILEQUIT=TRUE
> FSLMACHTYPE=linux_64-gcc4.2
> FSLTCLSH=/usr/local/fsl/4.0.2/bin/fsltclsh
> FSLMACHINELIST=
> FSLREMOTECALL=
> FSLWISH=/usr/local/fsl/4.0.2/bin/fslwish
> FSLCONFDIR=/usr/local/fsl/4.0.2/config
> FSLBROWSER=/usr/local/fsl/4.0.2/tcl/fslwebbrowser
> FSLDIR=/usr/local/fsl/4.0.2
> FSLLOCKDIR=
> FSLOUTPUTTYPE=NIFTI_GZ
>
> NLSPATH=/usr/share/locale/%l/%N
> PATH=/usr/local/fsl/4.0.2/bin:/usr/local/bin:/bin:/usr/bin:/usr/ 
> games:/usr/
> lib/qt3//bin:/home/hurry01/bin
> PYTHONPATH=:/usr/lib/ooo-2.1/program
> PKG_CONFIG_PATH=/usr/lib/qt4/lib64/pkgconfig
>
> ######################################################################
> #### DIRECTORY INFORMATION
> ######################################################################
>
> PWD:
> /home/hurry01
>
> total 168
> drwx--x--x 22 hurry01 hurry01  4096 2007-11-15 07:46 .
> drwxr-xr-x  6 root    root     4096 2007-11-14 17:42 ..
> -rw-------  1 hurry01 hurry01  1180 2007-11-14 17:42 .bash_history
> -rw-r--r--  1 hurry01 hurry01    24 2007-11-09 08:33 .bash_logout
> -rw-r--r--  1 hurry01 hurry01   376 2007-11-09 08:33 .bash_profile
> -rw-r--r--  1 hurry01 hurry01   124 2007-11-09 08:33 .bashrc
> drwx------  7 hurry01 hurry01  4096 2007-11-14 16:18 .beagle
> drwxr-xr-x  2 hurry01 hurry01  4096 2007-11-14 16:16 .config
> drwxr-xr-x  2 hurry01 hurry01  4096 2007-11-14 17:30 Desktop
> -rw-------  1 hurry01 hurry01    26 2007-11-14 16:16 .dmrc
> drwxr-xr-x  3 hurry01 hurry01  4096 2007-11-14 17:31 Documents
> drwxr-xr-x  2 hurry01 hurry01  4096 2007-11-14 16:16 Download
> -rw-rw-r--  1 hurry01 hurry01     0 2007-11-15 07:46  
> fslerrorreport.txt
> drwx------  2 hurry01 hurry01  4096 2007-11-14 17:17 .gconf
> drwx------  2 hurry01 hurry01  4096 2007-11-14 17:42 .gconfd
> drwx------  3 hurry01 hurry01  4096 2007-11-14 16:21 .gnome2
> drwx------  2 hurry01 hurry01  4096 2007-11-14 16:21 .gnome2_private
> -rw-rw-r--  1 hurry01 hurry01   146 2007-11-14 16:16 .gtk-bookmarks
> -rw-------  1 hurry01 hurry01     0 2007-11-14 17:42 .ICEauthority
> drwx------  4 hurry01 hurry01  4096 2007-11-14 16:16 .kde
> drwx------  3 hurry01 hurry01  4096 2007-11-14 16:16 .local
> drwxr-xr-x  3 hurry01 hurry01  4096 2007-11-14 16:16 .mcop
> -rw-rw-r--  1 hurry01 hurry01     0 2007-11-14 16:16 .mdk-menu- 
> migrated
> drwxr-xr-x  2 hurry01 hurry01  4096 2007-11-14 16:17 .MdkOnline
> drwx------  3 hurry01 hurry01  4096 2007-11-14 16:21 .mozilla
> drwxr-xr-x  2 hurry01 hurry01  4096 2007-11-14 16:16 Music
> drwxr-xr-x  2 hurry01 hurry01  4096 2007-11-14 16:16 Pictures
> drwxrwxr-x  2 hurry01 hurry01  4096 2007-11-14 17:42 .qt
> -rw-r--r--  1 hurry01 hurry01  3793 2007-11-09 08:33 .screenrc
> drwx------  5 hurry01 hurry01  4096 2007-11-14 17:34 tmp
> drwxr-xr-x  2 hurry01 hurry01  4096 2007-11-14 16:16 Videos
> -rw-------  1 hurry01 hurry01   508 2007-11-13 15:26 .viminfo
> drwxr-xr-x  2 hurry01 hurry01  4096 2007-11-14 16:17 .wapi
> -rw-------  1 hurry01 hurry01    68 2007-11-15 07:45 .Xauthority
> -rw-------  1 hurry01 hurry01 14002 2007-11-14 17:42 .xsession-errors
>
> ######################################################################
> #### IMAGE INFORMATION
> ######################################################################
>
>
> This error report is saved in the file: /tmp/fsl_QBrFtZ.gz
>
>
> ######################################################################
> #### MACHINE INFORMATION
> ######################################################################
>
> Uname:
> Linux
>
> df:
> Filesystem           1K-blocks      Used Available Use% Mounted on
> /dev/sda6            693616848   8164036 685452812   2% /home
>
> quota:
>
> Memory and Swap info:
> MemTotal:      4053128 kB
> MemFree:        148812 kB
> Buffers:         88648 kB
> Cached:        3296676 kB
> SwapCached:          0 kB
> Active:         864216 kB
> Inactive:      2690792 kB
> SwapTotal:     7494280 kB
> SwapFree:      7494144 kB
> Dirty:              12 kB
> Writeback:           0 kB
> AnonPages:      120920 kB
> Mapped:          27340 kB
> Slab:           295992 kB
> SReclaimable:   247404 kB
> SUnreclaim:      48588 kB
> PageTables:       2704 kB
> NFS_Unstable:        0 kB
> Bounce:              0 kB
> CommitLimit:   9520844 kB
> Committed_AS:   146844 kB
> VmallocTotal: 34359738367 kB
> VmallocUsed:    325424 kB
> VmallocChunk: 34359411707 kB
> HugePages_Total:     0
> HugePages_Free:      0
> HugePages_Rsvd:      0
> Hugepagesize:     2048 kB
>
> ######################################################################
> #### ENVIRONMENT INFORMATION
> ######################################################################
>
> FSLMULTIFILEQUIT=TRUE
> FSLMACHTYPE=linux_64-gcc4.2
> FSLTCLSH=/usr/local/fsl/4.0.2/bin/fsltclsh
> FSLMACHINELIST=
> FSLREMOTECALL=
> FSLWISH=/usr/local/fsl/4.0.2/bin/fslwish
> FSLCONFDIR=/usr/local/fsl/4.0.2/config
> FSLBROWSER=/usr/local/fsl/4.0.2/tcl/fslwebbrowser
> FSLDIR=/usr/local/fsl/4.0.2
> FSLLOCKDIR=
> FSLOUTPUTTYPE=NIFTI_GZ
>
> NLSPATH=/usr/share/locale/%l/%N
> PATH=/usr/local/fsl/4.0.2/bin:/usr/local/bin:/bin:/usr/bin:/usr/ 
> games:/usr/
> lib/qt3//bin:/home/hurry01/bin
> PYTHONPATH=:/usr/lib/ooo-2.1/program
> PKG_CONFIG_PATH=/usr/lib/qt4/lib64/pkgconfig
>
> ######################################################################
> #### DIRECTORY INFORMATION
> ######################################################################
>
> PWD:
> /home/hurry01
>
> total 176
> drwx--x--x 22 hurry01 hurry01  4096 2007-11-15 07:46 .
> drwxr-xr-x  6 root    root     4096 2007-11-14 17:42 ..
> -rw-------  1 hurry01 hurry01  1180 2007-11-14 17:42 .bash_history
> -rw-r--r--  1 hurry01 hurry01    24 2007-11-09 08:33 .bash_logout
> -rw-r--r--  1 hurry01 hurry01   376 2007-11-09 08:33 .bash_profile
> -rw-r--r--  1 hurry01 hurry01   124 2007-11-09 08:33 .bashrc
> drwx------  7 hurry01 hurry01  4096 2007-11-14 16:18 .beagle
> drwxr-xr-x  2 hurry01 hurry01  4096 2007-11-14 16:16 .config
> drwxr-xr-x  2 hurry01 hurry01  4096 2007-11-14 17:30 Desktop
> -rw-------  1 hurry01 hurry01    26 2007-11-14 16:16 .dmrc
> drwxr-xr-x  3 hurry01 hurry01  4096 2007-11-14 17:31 Documents
> drwxr-xr-x  2 hurry01 hurry01  4096 2007-11-14 16:16 Download
> -rw-rw-r--  1 hurry01 hurry01  4413 2007-11-15 07:46  
> fslerrorreport.txt
> drwx------  2 hurry01 hurry01  4096 2007-11-14 17:17 .gconf
> drwx------  2 hurry01 hurry01  4096 2007-11-14 17:42 .gconfd
> drwx------  3 hurry01 hurry01  4096 2007-11-14 16:21 .gnome2
> drwx------  2 hurry01 hurry01  4096 2007-11-14 16:21 .gnome2_private
> -rw-rw-r--  1 hurry01 hurry01   146 2007-11-14 16:16 .gtk-bookmarks
> -rw-------  1 hurry01 hurry01     0 2007-11-14 17:42 .ICEauthority
> drwx------  4 hurry01 hurry01  4096 2007-11-14 16:16 .kde
> drwx------  3 hurry01 hurry01  4096 2007-11-14 16:16 .local
> drwxr-xr-x  3 hurry01 hurry01  4096 2007-11-14 16:16 .mcop
> -rw-rw-r--  1 hurry01 hurry01     0 2007-11-14 16:16 .mdk-menu- 
> migrated
> drwxr-xr-x  2 hurry01 hurry01  4096 2007-11-14 16:17 .MdkOnline
> drwx------  3 hurry01 hurry01  4096 2007-11-14 16:21 .mozilla
> drwxr-xr-x  2 hurry01 hurry01  4096 2007-11-14 16:16 Music
> drwxr-xr-x  2 hurry01 hurry01  4096 2007-11-14 16:16 Pictures
> drwxrwxr-x  2 hurry01 hurry01  4096 2007-11-14 17:42 .qt
> -rw-r--r--  1 hurry01 hurry01  3793 2007-11-09 08:33 .screenrc
> drwx------  5 hurry01 hurry01  4096 2007-11-14 17:34 tmp
> drwxr-xr-x  2 hurry01 hurry01  4096 2007-11-14 16:16 Videos
> -rw-------  1 hurry01 hurry01   508 2007-11-13 15:26 .viminfo
> drwxr-xr-x  2 hurry01 hurry01  4096 2007-11-14 16:17 .wapi
> -rw-------  1 hurry01 hurry01    68 2007-11-15 07:45 .Xauthority
> -rw-------  1 hurry01 hurry01 14002 2007-11-14 17:42 .xsession-errors
>
> ######################################################################
> #### IMAGE INFORMATION
> ######################################################################
>
>
> This error report is saved in the file: /tmp/fsl_CMrFGD.gz
>


---------------------------------------------------------------------------
Stephen M. Smith, Professor of Biomedical Engineering
Associate Director,  Oxford University FMRIB Centre

FMRIB, JR Hospital, Headington, Oxford  OX3 9DU, UK
+44 (0) 1865 222726  (fax 222717)
[log in to unmask]    http://www.fmrib.ox.ac.uk/~steve
---------------------------------------------------------------------------

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