On 25.11.2007, at 00:14, gtau wrote:
> Im writing to get some help with registration.
[...]
> I then deskulled and registered it to example func running the FEAT
> GUI.
> FEAT completed running but in the report, the registration is
> really off.
Your FEAT analysis is overlaying sagittal and coronal images (best
seen in the second and second to last rows).
I've seen a very similar effect with FLIRT, and it seems that in my
case it was caused by unexpected orientation info in the NiFTI header.
Does the FLIRT part of your processing complain about the input
images having both qform and sform entries in the NiFTI header? (You
might need to run it with `-v´.)
If yes, I'd either try to use another NiFTI converter or add `-
usesqform´ to the FLIRT command line.
You can manually check the orientation info with fslhd; in my case
FreeSurfer's mri_convert apparently generally fills both the qform
and sform entries with the same data.
Regards,
Timm
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