My FSL is not the latest version. Do I have to download the newest one to run fslroi command line?
Thanks
XC
****************************************
Xuelin Cui
Department of Electrical Engineering
University of Hawaii-Manoa
Honolulu HI 96822
Tel: 1-808-956-0856
Email: [log in to unmask]
****************************************
----- Original Message -----
From: Andreas Bartsch <[log in to unmask]>
Date: Sunday, November 4, 2007 8:32 pm
Subject: [FSL] AW: [FSL] how does MELODCI organize spatial maps?
To: [log in to unmask]
> Hi Xuelin,
>
> have you looked at the fslroi syntax?
> It is very easy;)?
> Cheers-
> Andreas
>
> ________________________________
>
> Von: FSL - FMRIB's Software Library im Auftrag von Xuelin Cui
> Gesendet: So 04.11.2007 12:13
> An: [log in to unmask]
> Betreff: Re: [FSL] how does MELODCI organize spatial maps?
>
>
>
> Thanks
>
> But, what if I have 47 slices, but I only prefer slice from 4th to
> 45th?
> Thanks
>
> Xuelin
>
> ****************************************
> Xuelin Cui
> Department of Electrical Engineering
> University of Hawaii-Manoa
> Honolulu HI 96822
>
> Tel: 1-808-956-0856
> Email: [log in to unmask]
> ****************************************
>
> ----- Original Message -----
> From: "Christian F. Beckmann" <[log in to unmask]>
> Date: Sunday, November 4, 2007 3:47 pm
> Subject: Re: [FSL] how does MELODCI organize spatial maps?
> To: [log in to unmask]
>
> > Hi
> >
> > that won't work - melodic_IC is 4D but your matlab code only
> > indexes
> > 3 dimensions. It's easiest to sue fslroi on the command line for
> this>
> > fslroi melodic_IC out 0 64 0 64 0 42 0 30
> >
> > hth
> > christian
> >
> > On 4 Nov 2007, at 07:38, Xuelin Cui wrote:
> >
> > > Dear FSLers:
> > >
> > > I just wonder how does MELODCI organize the spatial map of
> each IC?
> > >
> > > I looked at the report html file in IC results folder. For a
> > single
> > > IC, there are 7*7 slices displaying on the report file,
> > starting
> > > from the top of the head untill the bottom. Each slice is of
> > size
> > > 64*64, and totally there are 30 ICs. Correspondingly, my
> > > melodic_IC.nii.gz file is of size 64*64*49*30.
> > >
> > > My question really is if I want to get rid of 7 slices of
> > spatial
> > > map that starts from top of the head (first row of pictures on
> > > report html file), should I just simply remove first 7 slices in
> >
> > > melodic_IC.nii.gz file?
> > >
> > > example in matlab:
> > >
> > > data=read_avw(ICName);
> > > data(:,:,1:ns-42)=[];
> > >
> > > where ICName is my path where melodic_IC.nii.gz is saved.
> > >
> > > Thanks alot
> > >
> > > Xuelin
> > >
> > > ****************************************
> > > Xuelin Cui
> > > Department of Electrical Engineering
> > > University of Hawaii-Manoa
> > > Honolulu HI 96822
> > >
> > > Tel: 1-808-956-0856
> > > Email: [log in to unmask]
> > > ****************************************
> >
> >
>
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