Hi,
What happens when you use avwswapdim input z -x y output
or fslswapdim input z -x y output (using current version of FSL)?
Thanks,
Mikolaj
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Mikolaj A. Pawlak, MD PhD
Neuroradiology Research Division
Department of Radiology
University of Pennsylvania
3600 Market Street Suite 370
Philadelphia, PA 19104
Phone: 215-662-3688
Fax: 215-615-3681
mail: [log in to unmask]
On Nov 9, 2007 2:37 PM, Jennifer Bramen <[log in to unmask]> wrote:
> Hi all,
>
> I have tried every possible permutation of the fslswapdim command to
> axialize my sagitally acquired T1 images. They start in ASR format. I need
> to be able to rotate 90 degrees, not only 180 to do this. Is there some tool
> I need in addition to fslswapdim? Are there additional orientation codes not
> listed in the help? I would prefer to use your tools as the method I have
> been using is unscriptable and takes too much time.
>
> Best regards
>
> Jennifer Bramen
> UCLA
>
--
****************************************
Mikolaj A. Pawlak, MD PhD
Neuroradiology Research Division
Department of Radiology
University of Pennsylvania
3600 Market Street Suite 370
Philadelphia, PA 19104
Phone: 215-662-3688
Fax: 215-615-3681
mail: [log in to unmask]
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