Hello
I've been using MODELLER to build homology models and comparing them
using coot.
When I read in the pdb files produced with modeller, most of the
atoms are grey and SSM superimpose, display ca, (and probably others)
do not work with these files.
(ssm - message = can't build tree), (display - persists in showing
all the grey atoms). (Occupancies are all 1.00, B's vary but aren't
0. or really large).
In the modeller-built pdb files, each atom record has the notation
1SG 1 (atoms are numbered sequentially) to the right of the
occupancy/B-factor columns.
If I edit the files to remove these columns (vi 1,$s/1SG....//), coot
behaves normally.
Is there some way to get coot treat these files as normal (without
editing them)? What is coot inferring about the pdb file that causes
these problems?
Sue
Sue Roberts
Biochemistry & Biophysics
University of Arizona
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