Hello,
The input to dtifit seems OK. Also I made a mistake. It actually shows
the last 2 slice not the first slice i.e. slice no. 1 and 2 but not slice 0.
Swati
Tim Behrens wrote:
> Hi - is it possible that it has processed all three slices, but when
> you look at it in fslview, the highest slice number is 2? If this is
> the problem, then I think it will be because fslview starts counting
> at 0 and not at 1, so slice 2 is actually the 3rd slice.
>
> T
> On 27 Oct 2007, at 10:56, Steve Smith wrote:
>
>> Hi - if you look at all timepoints of all slices of the data output
>> by eddy_correct do they look ok? I.e., is the input to dtifit ok?
>>
>> Cheers.
>>
>>
>> On 26 Oct 2007, at 17:39, Swati Rane wrote:
>>
>>> Hello,
>>>
>>> I use the older version of FSL (3.3). When I use the dtifit command
>>> for my 3
>>> slice data, the display says that it has processed all 3 slices, but
>>> when I
>>> look at the FA map in FSL view, I can see only the last 2 slices.
>>> Can you
>>> tell me what is the error in my processing?
>>>
>>> Thanks!
>>>
>>> Swati
>>
>>
>> ---------------------------------------------------------------------------
>>
>> Stephen M. Smith, Professor of Biomedical Engineering
>> Associate Director, Oxford University FMRIB Centre
>>
>> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
>> +44 (0) 1865 222726 (fax 222717)
>> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
>> ---------------------------------------------------------------------------
>>
--
___________________________________________________________________
Swati D. Rane
Ph.D. candidate (Bioengineering)
Department of Biomedical Engineering Lab: Yerkes Imaging Center
Georgia Institute of Technology Emory University
Email: [log in to unmask] Phone: 404 712 9109
Webpage: http://www.prism.gatech.edu/~gth780f/
___________________________________________________________________
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