I having been to trying to find a good GE DICOM converter (either to NIFTI
or analyze is fine). Our in-house MATLAB program, which we use for DICOM to
analyze conversion for SPM2 & 5 does not seem to work well with FSL, A and P
are switeched when images are displayed. I guess this may have to do
something with FSL ignoring certain information in the file, as mentioned in
the mricron website. DCM2NII converter from mricron works well for the
anatomicals, but not for one of our current studies which has 6600
functional DICOMs. There is some limitation within linux that does not allow
an operation to be performed on so many files (i.e, argument list too long).
I have also tried LONI, but this does not seem to work. Does anybody have
any suggestions? I have been trying to re-process some data through FEAT,
but have been reluctant to do so because of the A to P issue mentioned
above. Maybe I could just re-orient the images, but I imagine there would be
some problems with this since the coordinate information within the file is
not what is being shown.
Thanks,
Carlos
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