Hi,
Thanks Patrick and Ben for your comments. I get the error message below and
do not get a new shiftlist. I'm using analysis v1.0.15.
I have created the molecular system etc. already.
Thanks,
Nicola
Python nmrStar reader courtesy of Jurgen Doreleijers (BMRB) - with
modifications added. Parsing STAR file:
/home/nicolam/non_cognate_Im_DNase_analysis/Im7_E9DNase/titration_data/bmr718
8.str Done [71] subs with comment at beginning of line Done [280] subs with
comment not at beginning of line Parsed: [21] datanodes (top level count
only) Exception in thread Thread-1: Traceback (most recent call last):
File "/usr/lib/python2.4/threading.py", line 442, in __bootstrap
self.run()
File
"/usr/local/ccpnmr/ccpnmr1.0/python/ccpnmr/format/gui/ImportExportFormatPopup.py",
line 9 1, in run
self.returnValue = self.__target(*self.__args, **self.__kwargs)
File
"/usr/local/ccpnmr/ccpnmr1.0/python/ccpnmr/format/converters/DataFormat.py",
line 1542, i n readShifts
return self.readMeasurements(*args, **keywds)
File
"/usr/local/ccpnmr/ccpnmr1.0/python/ccpnmr/format/converters/DataFormat.py",
line 1596, i n readMeasurements
self.getMeasurements()
File
"/usr/local/ccpnmr/ccpnmr1.0/python/ccpnmr/format/converters/NmrStarFormat.py",
line 177,
in getMeasurements
self.messageReporter.showWarning("Warning"," Cannot read %ss for
%s...:\n%s" % (self.measure
mentType,self.formatLabel,errorMessage),self.guiParent)
File "/usr/local/ccpnmr/ccpnmr1.0/python/memops/gui/MessageReporter.py",
line 103, in showWarn ing
showWarning(title, message, parent)
File "/usr/local/ccpnmr/ccpnmr1.0/python/memops/gui/MessageReporter.py",
line 87, in showWarni ng
return tkMessageBox.showwarning(title, message, parent=parent)
File "/usr/lib/python2.4/lib-tk/tkMessageBox.py", line 88, in showwarning
return _show(title, message, WARNING, OK, **options)
File "/usr/lib/python2.4/lib-tk/tkMessageBox.py", line 75, in _show
res = Message(**options).show()
File "/usr/lib/python2.4/lib-tk/tkCommonDialog.py", line 48, in show
w = Frame(self.master)
File "/usr/lib/python2.4/lib-tk/Tkinter.py", line 2375, in __init__
Widget.__init__(self, master, 'frame', cnf, {}, extra)
File "/usr/lib/python2.4/lib-tk/Tkinter.py", line 1862, in __init__
self.tk.call(
RuntimeError: main thread is not in main loop
On Sep 5 2007, Patrick van der Wel wrote:
>>
>> To cut a long story short, my somewhat unusual sitution is that I have
>> been given a set of titration spectra but don't have the peak list for
>> the free spectrum. However, shifts of the free protein have been
>> deposited.
>>
>> Using Import --> Single File --> Chemical Shifts --> NMRStar, I've
>> tried importing the BMRB.str file directly, and just the shift table
>> copied from the entry but neither method works. Any ideas?
>The described procedure with the entire bmrb file should work, and
>recently has worked very well for me. Can you describe more specifically
>how it 'does not work'? Are there error messages? Does it not generate a
>new shiftlist in the project?
>
>Patrick
>
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