Hi all,
I would like to use "add strand" feature in coot-0.3.3, but it's not working
(it doesn't add anything). It looks like there's a problem with reference
structures, I am pasting the error message below. Any suggestions on how to
fix this would be very welcome!
Thanks very much!
Marija
/opt/coot-0.3.3/share/coot/reference-structures successfully opened
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1kth.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1koi.pdb
INFO:: SSE status was OK
has 0 sheets
Error reading /opt/coot-0.3.3/share/coot/reference-structures/1ka1.pdb
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1k7c.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1jl1.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1jk3.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1jg1.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1jfb.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1jf8.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1jcl.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1jbe.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1j9b.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1j98.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1ird.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1iqz.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1i8o.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1i4u.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1i40.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1i2t.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1i27.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1i12.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1i0v.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1i0d.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1hyo.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1hvb.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1hlr.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1hg7.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1heu.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1hdo.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1hdh.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1hbn.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1h97.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1h4x.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1gmx.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1gk9.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1ga6.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1g7a.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1g6x.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1g66.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1g61.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1g4i.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1g2y.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1g2b.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1fye.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1fsg.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1fn8.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1f9v.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1f94.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1f86.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1f4p.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1euw.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1et1.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1es9.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1eqo.pdb
INFO:: SSE status was OK
has 0 sheets
Error reading /opt/coot-0.3.3/share/coot/reference-structures/1ejg.pdb
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1eb6.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1e9g.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1e4m.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1e29.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1dy5.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1ds1.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1c7k.pdb
INFO:: SSE status was OK
has 0 sheets
Read OK: /opt/coot-0.3.3/share/coot/reference-structures/1c75.pdb
INFO:: SSE status was OK
has 0 sheets
Strand addition failure: message: Not Done
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