Hi - make sure that you don't for whatever reason have the
environment variable SGE_ROOT set, then FSL will not attempt to use
SGE, and will run everything in series.
If it still doesn't run, there's something wrong! What operating
system are you using?
Cheers.
On 31 Aug 2007, at 00:30, Lindgren, Kristen, Ann wrote:
> Thanks, Steve. I went to the download page and got the file, but it's
> unclear to me how to get SGE configured properly. I think I'll just
> wait until you guys finish the FSL course and put up some SGE setup
> instructions.
>
> In the meantime, though, I've tried running bedpostx but it won't run.
> It makes a data.bedpostX directory, queues the preprocessing
> stages, but
> then gets stuck on "queuing parallel processing stage." I'm guessing
> that this has something to do with SGE not being installed. Any ideas
> on how to make bedpostx work until I get SGE up and running? Thanks!
>
> Kristen
>
> -----Original Message-----
> From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On
> Behalf Of Steve Smith
> Sent: Thursday, August 30, 2007 6:46 PM
> To: [log in to unmask]
> Subject: Re: [FSL] new bedpost questions
>
> Hi - see the previous email on this:
> http://www.jiscmail.ac.uk/cgi-bin/webadmin?
> A2=ind0708&L=FSL&P=R36132&I=-3&X=37732E5440F60F8964&Y=steve%
> 40fmrib.ox.ac.uk
>
> On 30 Aug 2007, at 22:58, Kristen Lindgren wrote:
>
>> This may seem like a silly question, but where would one download
>> SGE for a
>> Mac? Thanks!
>>
>> Kristen
>
>
> ----------------------------------------------------------------------
> --
>
> ---
> Stephen M. Smith, Professor of Biomedical Engineering
> Associate Director, Oxford University FMRIB Centre
>
> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
> +44 (0) 1865 222726 (fax 222717)
> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
> ----------------------------------------------------------------------
> --
>
> ---
------------------------------------------------------------------------
---
Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
------------------------------------------------------------------------
---
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