Hi - the DOF are not controllable in mcflirt as it always uses rigid
body correction (dof=6) and is tuned for that.
If you need more DOF then you should use FLIRT. I think eddy_correct
will do what you want (have a look inside it).
Cheers.
On 24 Aug 2007, at 23:46, Jack Grinband wrote:
> Hi All,
> I need to change the default parameters for mcflirt. I looked in
> feat.tcl
> and a couple of other places but couldn't find the relevant code. I'd
> appreciate if someone could tell me where to look: I need to
> change the
> dofs from 6 to 9. thanks!
>
> jack
------------------------------------------------------------------------
---
Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
------------------------------------------------------------------------
---
|