I note that Coot 0.3.2 still has a problem about removing cis
peptides, in that "cis<->trans" does not remove the CISPEP lines
from the output PDB file, so Refmac pops them back again. Is this on
the list?
[in passing, cis peptide spurios can easily be introduced by Coot if
the "add-planar-peptide-restraints" flag is off: shouldn't this be on
by default?]
Phil
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