Thank you!
I soemhow luckily did it the right way!
Best,
Aga
On 20.07.2007 13:14 Uhr, "Steve Smith" <[log in to unmask]> wrote:
> Hi - yes, sorry, this is clarified in the doc for the next release.
> You should follow the lower set of instructions, though it doesn't
> really matter which order you do those two steps in.
> Cheers, Steve.
>
>
> On 20 Jul 2007, at 11:37, Agnieszka Burzynska wrote:
>
>> Dear all,
>>
>> In TBSS technical report as well as in the TBSS part of FSL
>> webpage, FA maps
>> preparation includes:
>> 1. pre-alignment (by FLIRT?) of images to correct for motion and eddy
>> currents
>> 2. DTIfit
>> 3. BET
>>
>> However, in the DTIfit part the sequence of procedures is:
>> 1. eddy_correct (is it the same as the FLIRT procedure?)
>> 2. BET on b=0 images (binary mask)
>> 3. DTIfit, whose output is already brain-extracted (due to the
>> binary brain
>> mask, so applying BET doesnt make sense to me anymore)
>>
>> Is there any real difference between the described procedures, or
>> they are
>> in fact the same (and it is just a matter of different description?)?
>>
>> Thank you!
>> Aga
>
>
> ------------------------------------------------------------------------
> ---
> Stephen M. Smith, Professor of Biomedical Engineering
> Associate Director, Oxford University FMRIB Centre
>
> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
> +44 (0) 1865 222726 (fax 222717)
> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
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