Hi,
On Mon, Jul 16, 2007 at 12:25:51PM +0100, Steve Smith wrote:
> Hi - your installation of FSL isn't working at all - see the detailed
> Suse FSL installation instructions on Michael Hanke's webpage for
> more on how to complete the installation.
My instructions are pretty much tailored to Debian and Ubuntu. I doubt
that they will work for Suse or other RPM-based distributions -- sorry.
Michael
> On 16 Jul 2007, at 11:00, Gabriel Ziegler wrote:
>
> >Hi,
> >
> >I just installed fsl (64bit) on a linux Suse machine and tried to
> >evaluate
> >it with FEEDS. I usually work on windows systems so i don't really
> >know
> >much about this system. I've got many errors and FEEDS doesn't finish
> >because of missing or corrupt files ?! The top command shows the
> >following
> >memory state (if this is helpful):
> >
> >top - 10:54:55 up 10 days, 1:54, 4 users, load average: 0.06, 0.28,
> >0.25
> >Tasks: 127 total, 2 running, 125 sleeping, 0 stopped, 0 zombie
> >Cpu(s): 0.3% us, 0.7% sy, 0.0% ni, 99.0% id, 0.0% wa, 0.0%
> >hi, 0.0%
> >si
> >Mem: 2055404k total, 1946580k used, 108824k free, 26984k
> >buffers
> >Swap: 6835616k total, 3500k used, 6832116k free, 1363904k
> >cached
> >
> >The exact output of FEEDS follows below. Any Ideas how to correct
> >this
> >problem(s)? For our fmri analysis the melodic tool would be most
> >important.
> >
> >Thanks in advance for your help.
> >Gabriel Ziegler
> >
> >FSL Evaluation and Example Data Suite v3.3
> >
> >start time = Mo Jul 16 10:51:27 CEST 2007
> >hostname = amd05
> >os = Linux amd05 2.6.13-15.15-default #1 Mon Feb 26 14:11:33 UTC 2007
> >x86_64 x86_64 x86_64 GNU/Linux
> >
> >/bin/rm -rf /home/ziegler/feeds/feeds/results ;
> >mkdir /home/ziegler/feeds/feeds/results
> >
> >
> >Starting PRELUDE & FUGUE at Mo Jul 16 10:51:27 CEST 2007
> >No output image created
> >Warning - test failed!
> >No output image created
> >Warning - test failed!
> >
> >Starting SUSAN at Mo Jul 16 10:51:28 CEST 2007
> >% error = 0.0
> >
> >Starting SIENAX (including testing BET and FLIRT and FAST) at Mo
> >Jul 16
> >10:52:20 CEST 2007
> >checking error on BET:
> >% error = 0.0
> >checking error on FLIRT:
> >No output image created
> >Warning - test failed!
> >checking error on FAST:
> >checking error on single-image binary segmentation:
> >No output image created
> >Warning - test failed!
> >checking error on partial volume images:
> >No output image created
> >Warning - test failed!
> >No output image created
> >Warning - test failed!
> >No output image created
> >Warning - test failed!
> >checking error on SIENAX volume outputs:
> >% error = 46.36
> >Warning - test failed!
> >% error = 2.35
> >Warning - test failed!
> >% error = 58.57
> >Warning - test failed!
> >% error = 40.66
> >Warning - test failed!
> >% error = 99.23
> >Warning - test failed!
> >
> >Starting BET2 at Mo Jul 16 10:52:33 CEST 2007
> >checking error on T1 brain extraction:
> >No output image created
> >Warning - test failed!
> >checking error on skull and scalp surfaces:
> >No output image created
> >Warning - test failed!
> >No output image created
> >Warning - test failed!
> >No output image created
> >Warning - test failed!
> >
> >Starting FEAT at Mo Jul 16 10:52:34 CEST 2007
> >checking error on filtered functional data:
> >No output image created
> >Warning - test failed!
> >checking error on raw Z stat images:
> >No output image created
> >Warning - test failed!
> >No output image created
> >Warning - test failed!
> >No output image created
> >Warning - test failed!
> >checking error on thresholded Z stat images:
> >No output image created
> >Warning - test failed!
> >No output image created
> >Warning - test failed!
> >No output image created
> >Warning - test failed!
> >checking error on position of largest cluster of Talairached zfstat1:
> >couldn't open
> >"/home/ziegler/feeds/feeds/results/fmri.feat/
> >cluster_zfstat1_std.txt": no
> >such file or directory
> > while executing
> >"open ${FEEDSDIR}/results/fmri.feat/cluster_zfstat1_std.txt r "
> > invoked from within
> >"if { $feeds(feat) } {
> >
> >puts "\nStarting FEAT at [ exec date ]"
> >
> ># fix FEAT setup file to use FEEDSDIR and FSLDIR
> >fsl:exec "cp ${FEEDSDIR}/data/fmri.fe..."
> > (file "./RUN" line 285)
> >
>
>
> ------------------------------------------------------------------------
> ---
> Stephen M. Smith, Professor of Biomedical Engineering
> Associate Director, Oxford University FMRIB Centre
>
> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
> +44 (0) 1865 222726 (fax 222717)
> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
> ------------------------------------------------------------------------
> ---
--
GPG key: 1024D/3144BE0F Michael Hanke
http://apsy.gse.uni-magdeburg.de/hanke
ICQ: 48230050
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