Hmmm - we thought we'd fixed that - what happens if you use avwcpgeom
to copy aspects of the header from the input to the output of FAST -
is AFNI happy then?
Cheers.
On 2 Jul 2007, at 20:31, Dan Kelley wrote:
> FSL:
>
> I am trying to convert a nii produced by FAST back into AFNI.
>
> The command I ran in FAST is :
> fast -t1 -os -op -c 4 -od AnatSeg1 AllAnat1.nii
>
> As previously posted, I then tried to bring the FSL output into
> afni with
> 3dcopy AnatSeg1_seg.nii.gz AnatFSLSeg
>
> The error I get is:
> ** ERROR: NO spatial transform (neither qform nor sform), in NIfTI
> file
>
> This is not a zipping error!
>
> The AFNI response is at:
>
> http://afni.nimh.nih.gov/afni/community/board/read.php?
> f=1&i=22280&t=22280#reply_22280
>
>
> Please let me know.
>
> Dan Kelley
> Wisconsin
------------------------------------------------------------------------
---
Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
------------------------------------------------------------------------
---
|