Hi,
On 12 Jun 2007, at 21:06, Bettyann Chodkowski wrote:
> Hello All,
>
> A few questions about fslview v3.3 running on sun/solaris:
>
> (1) "fslview --help" does not work for me. It launches fslview
> followed by:
> --help: Command not found.
>
> Could someone send me the output from this command?
I'm not sure why it doesn't work for you - are you sure you don't
have fslview aliased to a longer command, and are you sure this is
pointing to the right binary? For the FSL3.3 version I get:
fslview (Version 2.4pre0)
Copyright(c) 2005, University of Oxford
Dave Flitney
Usage:
fslview [-m 3d|ortho|lightbox] <baseimage> [-l lutname] [-b low,hi]
[ <overlay> [-l lutname] [-b low,hi] ] ...
Optional arguments (You may optionally specify one or more of):
-V,--verbose switch on diagnostic messages
-h,--help display this message
-m,--mode Initial viewer mode. One of: 3d; ortho;
lightbox
-l,--lut Lookup table name. As per GUI, one of:
Greyscale; "Red-Yellow"; "Blue-Lightblue"; Red; Green; Blue; Yellow;
Pink; Hot; Cool; Copper, etc.
-b,--bricon Initial bricon range, e.g., 2.3,6
> (2) Are the lookup tables listed in the 'Overlay Information
> Dialog' stored as external files?
Not all of them - some are in $FSLDIR/etc/luts
> (3) I see that fslview uses the lut name stored in 'aux_file' in an
> AVW .hdr field. Might fslview look at
> another header field for transparency?
It could, but that would need a change to the NIFTI definition, and
I'm not sure it makes sense to decide in general what an image's
transparency should be - it would be more generally useful I think to
be able to set transparency on the command line - and that is on our
TODO list.
Cheers.
>
> Thank you,
> - BettyAnn
------------------------------------------------------------------------
---
Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
------------------------------------------------------------------------
---
|