> > I believe in ANSIG there was the possibilty of typing triplets of
> > residues so one can determine the position of a triplet in the amino
> > acid sequence.
>
> By a macro that calls out to the Grzesiek & Bax cacb program seq_type,
> yes.
I will look into calling this, or maybe running something similar of my
own creation.
> > I know you can type individual residues in analysis, Is
> > it possible to get a probability for a stretch of residues?
>
> Tim has his spin system typing algorithm for all the spin systems, but I
> agree that it would be extremely useful to build the <locate short-stretch
> of connected spin systems in sequence> functionality back in.
>
> Dunno if I'm out of date here (haven't been at this stage since 1.0.11 or
> so), but I also find the individual typing is not as powerful as it
> could/should be for the stage where you have just Ca & Cb shifts.
Part of trouble here is the lack of 2D chemical shift distributions in the
data model. However, once we move to the new API implementation then we
will be able to have complex data types like matricies that can handle
such things.
> I guess Tim could use some detailed feedback from users about cases that
> illustrate where things don't work as expected?
Yes, as always, but to me directly rather than to the list.
Thanks,
T.
-------------------------------------------------------------------------------
Dr Tim Stevens Email: [log in to unmask]
Department of Biochemistry [log in to unmask]
University of Cambridge Phone: +44 1223 766018 (office)
80 Tennis Court Road +44 7816 338275 (mobile)
Old Addenbrooke's Site +44 1223 364613 (home)
Cambridge CB2 1GA WWWeb: http://www.bio.cam.ac.uk/~tjs23
United Kingdom http://www.pantonia.co.uk
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