Optimize zone is also a good choice. Just drag it to the right
conformation. Hold Ctrl to drag only one atom. If you include a region
for real space refinement, there will be no clashes between amino
acids in the region.
Nian
On 5/28/07, Yanming Zhang <[log in to unmask]> wrote:
> Hi,
>
> I use coot almost around the clock. One thing troubles me is that:
> when clicking on 'real space refine zone', coot seems only care about the
> 'real space'(Electron density), sometimes it will bring the model to
> the density no matter whether the density was already claimed by other
> model atoms or not, resulting in clash and unreasonable geometry. How can
> I avoid this?
>
> Sorry for an old crystallographer to ask so babyish question. But your
> help can save me lots of time.
> Thanks
> Yanming
>
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