Hi Steve,
On 20. Apr 2007, at 07:46 Uhr, Steve Smith wrote:
> HI - it may just be that your syntax is wrong - all options including
> the -od have to go before the input image list.
Thanks for the pointer, but moving the *-od my_basename" in front of
the volume declaration (or leaving it out for that matter) result in
the same "Empty input image. Nothing to do!" error. I guess I will have
to check the temporary copies mfast createst to see where it goes off
track.
anyway thanks & ahoi
Sebastian
> Cheers.
>
>
> On 20 Apr 2007, at 02:30, Sebastian Moeller wrote:
>
>> Hello Experts,
>>
>> I got a smallish problem with mfast, that is I can either segfault it
>> (by running mfast_exe directly) or I get "Empty input image. Nothing
>> to do!" (by using the mfast script). The command line I try is:
>> "mfast -v5 -n -i 10 -s 2 -r ./mri/t1.img ./mri/t2.img -od mfast_"
>> It does not matter whether I feed in nii, nii.gz or img files always
>> I get the complaint about the empty input image, even though fslview
>> shows that the two volumes are actually there.
>> Now, clearly, I do something wrong here, please let me know what (&
>> why) so I can improve. Interestingly, fast does work.
>>
>> FSL 3.3.11 (sources of 3.3.7 with patched avwutils, randomise, bet2,
>> compiled under suse 10.1 x86_64, gcc 4.1.0), mfast version 3.53. The
>> same error also happens with the freesurfer supplied mfast from fsl
>> 3.2, so probably driver mistake/pebkac.
>>
>> ahoi & thanks
>> Sebastian
>> --
>> Sebastian Moeller
>>
>> Tel.: 04 21 - 2 18 - 78 38 oder 96 91
>> Fax.: 04 21 - 2 18 - 90 04
>> GSM: 01 62 - 3 25 45 59
>> [log in to unmask]
>>
>> AG Kreiter / FB 2
>> Institut fuer Hirnforschung III
>> Abteilung Theoretische Neurobiologie
>> Universitaet Bremen
>> Biogarten
>> Hochschulring 16a
>> Postfach 33 04 40
>> 28359 Bremen
>
>
> -----------------------------------------------------------------------
> ----
> Stephen M. Smith, Professor of Biomedical Engineering
> Associate Director, Oxford University FMRIB Centre
>
> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
> +44 (0) 1865 222726 (fax 222717)
> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
> -----------------------------------------------------------------------
> ----
>
>
--
Sebastian Moeller
Tel.: 04 21 - 2 18 - 78 38 oder 96 91
Fax.: 04 21 - 2 18 - 90 04
GSM: 01 62 - 3 25 45 59
[log in to unmask]
AG Kreiter / FB 2
Institut fuer Hirnforschung III
Abteilung Theoretische Neurobiologie
Universitaet Bremen
Biogarten
Hochschulring 16a
Postfach 33 04 40
28359 Bremen
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