Indeed, after you told me to check it I saw the graph representation of the design only included in the 'average' the first two input files.
thank you for the help
martin
----- Original Message -----
From: Steve Smith <[log in to unmask]>
Date: Saturday, April 21, 2007 10:00 am
Subject: Re: [FSL] More FEAT script error (at .fsf writing)
To: [log in to unmask]
> Ah, yes, sorry, it's just that some model variables only get set
> properly when the GUI is used to setup new EVs etc - so it's
> possible
> I think to increase the number of EVs (etc) without this properly
> happening (eg by loading a partially complete design.fsf and not
> opening the model GUI) - will try to get this sorted in the future
> but for now hopefully you have what you need....
>
> Cheers, Steve.
>
>
> On 21 Apr 2007, at 14:57, Martin M Monti ([log in to unmask]) wrote:
>
> > Steve,
> >
> > the script is now correctly produced!
> > What exactly was the problem?
> >
> > m
> >
> > ----- Original Message -----
> > From: Steve Smith <[log in to unmask]>
> > Date: Saturday, April 21, 2007 3:08 am
> > Subject: Re: [FSL] More FEAT script error (at .fsf writing)
> > To: [log in to unmask]
> >
> >> Hmmm. What happens if you open the model specification sub-GUI,
> >> display the model, press OK, then try to save?
> >> If this doesn't fix it, please send me enough details to reproduce
> >> the problem and we'll track it down.
> >> Cheers, Steve.
> >>
> >>
> >>
> >> On 20 Apr 2007, at 23:11, Martin M Monti ([log in to unmask])
> >> wrote:
> >>
> >>> Hi,
> >>>
> >>> if you recall I had a problem with a truncated .fsf file for a
> >> FEAT
> >>> analysis some days ago. I thought it was my mishandling of the
> >>> file, but in fact I just noticed that when I save from the
> >> FEAT_GUI
> >>> the .fsf design, I get the following error and the file is
> >>> truncated half a way:
> >>>
> >>> Error:
> >>> can't read "fmri(evg3.1)": no such element in array
> >>> can't read "fmri(evg3.1)": no such element in array
> >>> while executing
> >>> "puts $channel "
> >>> # Higher-level EV value for EV $i and input $j
> >>> set fmri(evg${j}.$i) $fmri(evg${j}.$i)""
> >>> (procedure "feat5:write" line 533)
> >>> invoked from within
> >>> "feat5:write .r 1 1 0 /mounts/jukebox_static/osherson/mmonti/
> >>> LingLog2/FSL/Group/Gr_15_OLS"
> >>> ("uplevel" body line 1)
> >>> invoked from within
> >>> "uplevel #0 $cmd $args"
> >>>
> >>> I tried changing the order of my input to see whether it was a
> >>> specific subject causing the problem but so far it doesn't seem
> >> to
> >>> be the case. It always truncates after the ninth line:
> >>>
> >>> [...]
> >>>
> >>> # 4D AVW data or FEAT directory (8)
> >>> set feat_files(8)
> >> "/mounts/jukebox_static/osherson/mmonti/LingLog2/
> >>> FSL/MW/Scripts/MW_all.gfeat/cope1.feat"
> >>>
> >>> # 4D AVW data or FEAT directory (9)
> >>> set feat_files(9) "/mounts/jukebox_static/osherson/mmonti/Ling
> >>>
> >>> [end of file]
> >>>
> >>> I tried re-doing the script from scratch, but got the same
> problem.>>>
> >>> Suggestions?
> >>>
> >>> thanks
> >>>
> >>> martin
> >>
> >>
> >> -----------------------------------------------------------------
> ---
> >> ----
> >> ---
> >> Stephen M. Smith, Professor of Biomedical Engineering
> >> Associate Director, Oxford University FMRIB Centre
> >>
> >> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
> >> +44 (0) 1865 222726 (fax 222717)
> >> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
> >> -----------------------------------------------------------------
> ---
> >> ----
> >> ---
> >>
>
>
> --------------------------------------------------------------------
> ----
> ---
> Stephen M. Smith, Professor of Biomedical Engineering
> Associate Director, Oxford University FMRIB Centre
>
> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
> +44 (0) 1865 222726 (fax 222717)
> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
> --------------------------------------------------------------------
> ----
> ---
>
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