Hi, this sounds odd, like the call to dof2gipl is wrong - but I don't
see how it could be as this is generated by a script..... could you
upload the example two images in question (the original input and
reference image being processed) and we can take a look.
> Please upload the files in a single compressed tarfile to
> http://www.fmrib.ox.ac.uk/cgi-bin/upload.cgi
> and then email me the upload ID.
Cheers, Steve.
On 8 Mar 2007, at 18:58, Kelly wrote:
> Hi,
>
> I am trying to run tbss_2_reg but receive an error when it tries to do
> the dof2gipl command:
> itkTransformation::New: Unknown file format
>
> Because it doesn't write a file it then gives me an error on the rest
> of this part of the script that estimates the mean deformation and
> therefore the nonlinear.msf file contains 0 bytes
>
> Any suggestions? I tried to search the list serve and it doesn't seem
> like anyone else has had this issue...
>
> Thanks so much for your help in advance,
>
> Kelly Brown
> UCHSC Altitude Research Center
> Denver, CO USA
>
>
> ** ERROR: nifti_image_read(grotNx.hdr): can't open header file
> ** ERROR: nifti_image_open(grotNx.hdr): bad header info
> Error: failed to open file grotNx.hdr
> Error:: FslGetIntensityScaling: Null pointer passed for FSLIO
> ** ERROR: nifti_image_read(grotNy.hdr): can't open header file
> ** ERROR: nifti_image_open(grotNy.hdr): bad header info
> Error: failed to open file grotNy.hdr
> Error:: FslGetIntensityScaling: Null pointer passed for FSLIO
> ** ERROR: nifti_image_read(grotNz.hdr): can't open header file
> ** ERROR: nifti_image_open(grotNz.hdr): bad header info
> Error: failed to open file grotNz.hdr
> Error:: FslGetIntensityScaling: Null pointer passed for FSLIO
> ** ERROR: nifti_image_read(grotSx): can't open header file
> ** ERROR: nifti_image_open(grotSx): bad header info
> Error: failed to open file grotSx
> Error:: FslGetIntensityScaling: Null pointer passed for FSLIO
> ** ERROR: nifti_image_read(grotSS): can't open header file
> ** ERROR: nifti_image_open(grotSS): bad header info
> Error: failed to open file grotSS
> ERROR: Could not open image grotSS
> Image Exception : #22 :: Failed to read volume grotSS
> terminate called after throwing an instance of 'RBD_COMMON::Exception'
> /usr/local/fsl/bin/tbss_reg: line 50: 4069 Aborted
> $FSLDIR/bin/avwstats++ grotSS -M -P 50 >../${I2R}_nonlinear.msf
>
>
>
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Stephen M. Smith, Professor of Biomedical Engineering
Associate Director, Oxford University FMRIB Centre
FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
+44 (0) 1865 222726 (fax 222717)
[log in to unmask] http://www.fmrib.ox.ac.uk/~steve
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