Hi Wayne,
I have suse 10.0, and I recently upgraded analysis to version 1.0 release 13.
What is the "analysis -m" option?
I will try to use pre-calculated countours, perhaps that will help me if i can
switch from using pre-calculated countours to the normal way easily.
roberto
On Friday 16 February 2007 14:40, Wayne Boucher wrote:
> Hello,
>
> Are you on a Linux box? And which version of Analysis are you using?
> (One nasty and one not-so-nasty memory leak was sorted in 1.0.13.)
>
> In theory a native OpenGL ought to be faster. (Brian could give you
> better chapter and verse on that one.) But 256 MB ram is definitely
> pushing it.
>
> As of 1.0.13 you can use pre-calculated contours (after you pick your
> peaks!). This should help a lot, especially on a low-memory machine.
> (But of course you cannot then more the contour levels up and down.)
>
> There is a -m option when you start up analysis. The default is 128 Mb.
> But that is only a measure of (most of) the C world memory, it excludes
> the Python world memory. So for you, "analysis -m 64" might be a better
> option. (Hard to call, that one.)
>
> Wayne
>
> On Fri, 16 Feb 2007, Roberto Kopke Salinas wrote:
> > Hi Brian,
> >
> > Thanks.
> > Yes the peaks were within the assignment tolerances. It looks like a bit
> > a silly, but i just quitted and re-started the program and now the
> > program it is drawing the assignments on the spectrum!!
> >
> > Anyway I have another question/comment: analysis is quite slow on my
> > computer (256MB ram) and uses a large amount of memory, becomming more
> > and more slow during the day. Is this related to the fact I am using Tk
> > as graphics handler? Are there ways to circunvent this?
> >
> > roberto
> >
> > On Friday 16 February 2007 13:53, Brian Smith wrote:
> > > On Fri, 16 Feb 2007, Roberto Kopke Salinas wrote:
> > > > I added a new peak and a new spin system in my hsqc spectrum. However
> > > > when I try to link peaks in HNCACB to this new spin system, the new
> > > > resonaces do not appear as possibilities in the assignment panel.
> > >
> > > Are the HNCACB peaks within the shift tolerances of the new resonances
> > > shifts (check shifts of each peak and tolerances for each spectrum)?
> > >
> > > > I can select both peaks and propagate the assignment, but then I
> > > > still dont see the assignment drawn on the spectrum.
> > >
> > > Propagate will only work if the resonances are within the assignment
> > > tolerances.
> >
> > --
> > Roberto Kopke Salinas
> > Instituto de Química
> > Universidade de São Paulo
> > Av Prof Lineu Prestes 748
> > 05508-900 São Paulo SP Brasil
> > Tel: #55-11-3091-3312 r. 110
--
Roberto Kopke Salinas
Instituto de Química
Universidade de São Paulo
Av Prof Lineu Prestes 748
05508-900 São Paulo SP Brasil
Tel: #55-11-3091-3312 r. 110
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