Hi, it's not clear what this error is referring to. You should view all timepoints of the data being fed
into eddy_correct, and also the data output by it, to see if it's clear whether there is a problem
here. The output should have all timepoint volumes nicely aligned to each other. Was the input
filename itself maybe illegal, for example containing a space?
Cheers, Steve.
On Wed, 17 Jan 2007 15:13:57 -0000, Shan Shen <[log in to unmask]> wrote:
>Hi, everybody,
>
>I've just started to use FSL to analyze my DTI data. The first step,
>eddy current correction gave error messages as follows:
>
>Errors: processing vol0000.nii.gz
> processing vol0001.nii.gz
> ....
> processing vol00012.nii.gz
>
>My data has 12 directions and one B0 image. Despite the errors, it does
>generate a data.nii.gz file as named before the start. I would like to
>know what the errors mean and whether the data.nii.gz file is the
>corrected data and still can be used in the next step?
>
>Many thanks
>
>Dr Shan Shen
>
>===========================================================
=============
|