Hi -
This email train a few days ago addresses exactly this problem.
http://www.jiscmail.ac.uk/cgi-bin/webadmin?
A2=ind0612&L=FSL&P=R16636&I=-3&X=1C7CFF1E9EF73B331C&Y=behrens%
40fmrib.ox.ac.uk
If you go through this train to the end, you should be ok.
Note that my first reply had a typo error in one of the commands,
which Kirk found - so you will need to look through my second reply
as well.
Cheers
T
On 9 Jan 2007, at 15:46, Pat Vee wrote:
> Hi all,
>
> I'm using MRIConvert to convert dicom files to nifti format - after
> doing
> so, I check the orientation with avworient and the images are stored
> neurologically. When I try to swap the orientation (avworient -
> swaporient
> IMAGE) then check again, it says that they're still stored
> neurologically.
> When I view the images in fslview, the "swapped" is exactly the
> same as the
> original. If I look at the header, the only difference that I see
> is that
> the description is changed (from the original description of my
> series) to
> FSL3.2beta - this itself is confusing, since I have FSL3.3
> installed... Any
> thoughts on what I might be doing wrong?
>
> Thanks in advance,
> Pat
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