Hello,
I've hopefully fixed that now (it was a definition problem in
MoleculeBasic.py), and the patch is on the update server.
Wayne
On Tue, 30 Jan 2007, Roberto Kopke Salinas wrote:
> Dear Rasmus,
>
> I have created a new molecule and a new chain,where i modified the residues
> which were wrong, and then i could transfer assignments from chain A to chain
> B using the menu:Molecules and then Copy Chain Assignments.
> This option transfer the assignments from chain A and B. However when I try to
> duplicate the assignments selecting both chains as target, the program gives
> error:
>
> >>> Exception in Tkinter callback
> Traceback (most recent call last):
> File "/home/roberto/bin/ccpnmr/python2.4/lib/python2.4/lib-tk/Tkinter.py",
> line 1345, in __call__
> return self.func(*args)
> File
> "/home/roberto/bin/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/CopyChainAssignmentsPopup.py",
> line 439, in copyAssignments
> duplicateResidueAssignments(residueA,
> residueB,experimentChains=experimentChains)
> File
> "/home/roberto/bin/ccpnmr/ccpnmr1.0/python/ccpnmr/analysis/MoleculeBasic.py",
> line 311, in duplicateResidueAssignments
>
> AttributeError: 'MolSystem' object has no attribute 'newResonance'
>
>
> In any case everything seems to be fine now, except for one spin system which
> i had not yet connected to a residue in the original chain (chain A), but i
> can easily connect to the new chain later on.
>
> best wishes,
>
> roberto
>
> On Friday 26 January 2007 13:41, Rasmus Fogh wrote:
> > Dear Roberto,
> >
> > Looking at your files, but still no obvious answer.
> >
> > Two questions:
> >
> > Is you Molsystem.xml file at
> > /home/roberto/nmr/felipe/analysis/ctdmbf/ccp/MolSystem.xml
> > where teh files say it should?
> >
> > Is what you sent the complete error trace, and if not could you send all
> > of it? You often get a very ling trace interspersed with printed
> > statements, reflecting that a file load may trigger another file load
> > (etc.) and the error may be deep in the nesting.
> >
> > Yours,
> >
> > Rasmus
> >
> > ---------------------------------------------------------------------------
> > Dr. Rasmus H. Fogh Email: [log in to unmask]
> > Dept. of Biochemistry, University of Cambridge,
> > 80 Tennis Court Road, Cambridge CB2 1GA, UK. FAX (01223)766002
> >
> > On Wed, 24 Jan 2007, Roberto Kopke Salinas wrote:
> > > Dear All:
> > > Since I added another chain in my molecule system (chain C), I have not
> > > been able to load my project. Analysis gives the error message below.
> > > Does anyone has an idea of where the problem is?
> > >
> > > roberto
> > >
> > > >>> last xml element read:
> > >
> > > </_StorageUnit>
> > >
> > >
> > > parser state was:
> > > checking object validity
> > >
> > > ERROR loading xml ccp.molecule.MolSystem ccp/MolSystem.xml
> > > Error dereferencing link to Atom. key was:
> > > ['MS1', 'A', 1, 'C']
> > > Error dereferencing atoms for object ccp.nmr.Nmr.AtomSet with (partial)
> > > key : ['auto1168520119.92', 1]
> > >
> > > --
> > > Roberto Kopke Salinas
> > > Instituto de Química
> > > Universidade de São Paulo
> > > Av Prof Lineu Prestes 748
> > > 05508-900 São Paulo SP Brasil
> > > Tel: #55-11-3091-3312 r. 110
>
> --
> Roberto Kopke Salinas
> Instituto de Química
> Universidade de São Paulo
> Av Prof Lineu Prestes 748
> 05508-900 São Paulo SP Brasil
> Tel: #55-11-3091-3312 r. 110
>
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