Hello,
This is (fortunately just) a deprecation warning which means that the data
is not totally consistent with the current API (which is a halfway house
between the old API and the soon-to-be new API). (There are good reasons
why this particular data cannot be made compatible with the current,
halfway house, API.)
Wayne
On Wed, 31 Jan 2007, Victoria Higman wrote:
> Hi there,
>
> I just had the following traceback when opening the window to the look
> at the reference chemical shifts. I was able to access everything I
> wanted, but noticed these errors. Not sure if they are important or not,
> but thought you might like to know.
>
> Vicky
>
> <ccp.nmr.Nmr.NmrReferenceStore ['auto1164118925.49', 'protein', 'ALA']>
> Deprecated: getByKey called with too short key
> from doLoad line 770 in
> /swx/ccpnv/ccpnmr1.0/python/memops/format/xml/XmlIO.py:
> [" obj = oo.getByKey(endMap['class'],useKey)\n"]
> (<ccp.nmr.NmrReference.ChemCompNmrRef ['auto1164118925.49', 'protein',
> 'ALA', 'BioMagResBank']>,)
> <ccp.nmr.Nmr.NmrReferenceStore ['auto1164118925.49', 'protein', 'ALA']>
> (<ccp.nmr.NmrReference.ChemCompNmrRef ['auto1164118925.49', 'protein',
> 'ALA', 'BioMagResBank']>,)
> <ccp.nmr.Nmr.NmrReferenceStore ['auto1164118925.49', 'protein', 'ALA']>
> (<ccp.nmr.NmrReference.ChemCompNmrRef ['auto1164118925.49', 'protein',
> 'ALA', 'BioMagResBank']>,)
> <ccp.nmr.Nmr.NmrReferenceStore ['auto1164118925.49', 'protein', 'ALA']>
> (<ccp.nmr.NmrReference.ChemCompNmrRef ['auto1164118925.49', 'protein',
> 'ALA', 'BioMagResBank']>,)
> <ccp.nmr.Nmr.NmrReferenceStore ['auto1164118925.49', 'protein', 'ALA']>
> (<ccp.nmr.NmrReference.ChemCompNmrRef ['auto1164118925.49', 'protein',
> 'ALA', 'BioMagResBank']>,)
> <ccp.nmr.Nmr.NmrReferenceStore ['auto1164118925.49', 'protein', 'ALA']>
> (<ccp.nmr.NmrReference.ChemCompNmrRef ['auto1164118925.49', 'protein',
> 'ALA', 'BioMagResBank']>,)
> <ccp.nmr.Nmr.NmrReferenceStore ['auto1164118925.49', 'protein', 'TYR']>
> Deprecated: getByKey called with too short key
> from doLoad line 770 in
> /swx/ccpnv/ccpnmr1.0/python/memops/format/xml/XmlIO.py:
> [" obj = oo.getByKey(endMap['class'],useKey)\n"]
> (<ccp.nmr.NmrReference.ChemCompNmrRef ['auto1164118925.49', 'protein',
> 'TYR', 'BioMagResBank']>,)
> <ccp.nmr.Nmr.NmrReferenceStore ['auto1164118925.49', 'protein', 'TYR']>
> (<ccp.nmr.NmrReference.ChemCompNmrRef ['auto1164118925.49', 'protein',
> 'TYR', 'BioMagResBank']>,)
> <ccp.nmr.Nmr.NmrReferenceStore ['auto1164118925.49', 'protein', 'TYR']>
> (<ccp.nmr.NmrReference.ChemCompNmrRef ['auto1164118925.49', 'protein',
> 'TYR', 'BioMagResBank']>,)
> <ccp.nmr.Nmr.NmrReferenceStore ['auto1164118925.49', 'protein', 'TYR']>
> (<ccp.nmr.NmrReference.ChemCompNmrRef ['auto1164118925.49', 'protein',
> 'TYR', 'BioMagResBank']>,)
> <ccp.nmr.Nmr.NmrReferenceStore ['auto1164118925.49', 'protein', 'PHE']>
> Deprecated: getByKey called with too short key
> from doLoad line 770 in
> /swx/ccpnv/ccpnmr1.0/python/memops/format/xml/XmlIO.py:
> [" obj = oo.getByKey(endMap['class'],useKey)\n"]
> (<ccp.nmr.NmrReference.ChemCompNmrRef ['auto1164118925.49', 'protein',
> 'PHE', 'BioMagResBank']>,)
> <ccp.nmr.Nmr.NmrReferenceStore ['auto1164118925.49', 'protein', 'PHE']>
> (<ccp.nmr.NmrReference.ChemCompNmrRef ['auto1164118925.49', 'protein',
> 'PHE', 'BioMagResBank']>,)
>
>
>
> --
> ****************************************************
> Dr. Victoria A. Higman
> Leibniz-Institut fuer Molekulare Pharmakologie (FMP)
> Robert-Roessle-Str. 10
> 13125 Berlin
> Germany
> Phone: +49-30-94793 223
> E-mail: [log in to unmask]
> ****************************************************
>
|